Job Description P76042 Confidence 100.00% Date Thu Jan 5 12:17:42 GMT 2012 Rank 32 Aligned Residues 365 % Identity 17% Template c2fncA_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:maltose abc transporter, periplasmic maltose-binding PDBTitle: thermotoga maritima maltotriose binding protein bound with2 maltotriose. Resolution 1.70 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	I	E	F	M	H	S	S	V	E	Q	E	R	Q	A	V	I	S	K	L	I	A	R	F	E	K	E	N	P	G	I	T	V	K	Q	V	P	V	E	E	D	A	Y	N	T	K	V	I	T	L	S	R	S	G	S	L	P	E	V	I	E	T	S	H	D	Y	A	K	V	M	D	K	E	Q	L	I	D	R	K	A
Query Conservation
Alig confidence								.	.	.																				.
Template Conservation								.	.	.																				.
Template Sequence		K	L	T	I	W	C	.	.	.	S	E	K	Q	V	D	I	L	Q	K	L	G	E	E	F	K	A	K	Y	.	G	I	P	V	E	V	Q	Y	V	D	F	G	S	I	K	S	K	F	L	T	A	A	P	Q	G	Q	G	A	D	I	I	V	G	A	H	D	W	V	G	E	L	A	V	N	G	L	I	E	P	I	P
Template Known Secondary structure								.	.	.																				.	S																					G	G	G	T		S		S						G	G	G							T	T		B
Template Predicted Secondary structure								.	.	.																				.
Template SS confidence
		6	.	.	.	10	.				.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	T	V	I	S	N	V	G	E	G	A	F	Y	D	G	V	L	R	I	V	R	T	E	D	G	S	A	W	T	G	V	P	V	S	A	W	I	G	G	I	W	Y	R	K	D	V	L	A	K	A	G	L	E	E	P	K	N	W	Q	Q	L	L	D	V	A	Q	K	L	N	D	P	A	N	K	K	Y	G	I	A
Query Conservation
Alig confidence				.	.	.	.	.																				.	.																						.	.	.	.
Template Conservation				.	.	.	.	.																				.	.																						.	.	.	.
Template Sequence		N	F	.	.	.	.	.	S	D	L	K	N	F	Y	D	T	A	L	K	A	F	S	Y	G	G	K	.	.	L	Y	G	V	P	Y	A	M	E	A	V	A	L	I	Y	N	K	D	Y	V	D	.	.	.	.	S	V	P	K	T	M	D	E	L	I	E	K	A	K	Q	I	D	E	E	Y	G	G	E	V	R	G	F
Template Known Secondary structure				.	.	.	.	.	G	G	G	G	G	B								T			T	T		.	.																	T	T	T		S	.	.	.	.	S			S	B															T	T	T	S	S
Template Predicted Secondary structure				.	.	.	.	.																				.	.																						.	.	.	.
Template SS confidence
		82	.						.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.			.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.					.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.							.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.		.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure																												.	.	.	.	.	.																																.
Query SS confidence																												.	.	.	.	.	.																																.
Query Sequence		L	P	T	A	E	S	V	L	T	E	Q	S	F	S	Q	F	A	L	S	N	Q	A	N	V	F	N	.	.	.	.	.	.	A	E	G	K	I	T	L	D	T	P	E	M	M	Q	A	L	T	Y	Y	R	D	L	T	A	N	T	M	P	G	S	N	.	D	I	M	E	V	K	D	A	F	M	N	G	T	A	P	M
Query Conservation																												.	.	.	.	.	.																																.
Alig confidence								.	.	.																		.	.	.	.	.	.																																.
Template Conservation								.	.	.
Template Sequence		I	Y	D	V	A	N	.	.	.	F	Y	F	S	A	P	F	I	L	G	Y	G	G	Y	V	F	K	E	T	P	Q	G	L	D	V	T	D	I	G	L	A	N	E	G	A	V	K	G	A	K	L	I	K	R	M	I	D	E	G	V	L	T	P	G	D	N	Y	G	T	M	D	S	M	F	K	E	G	L	A	A	M
Template Known Secondary structure					T	T		.	.	.											T	T								T	T									T	T	S																T	T	S	S		T	T												T	T
Template Predicted Secondary structure								.	.	.
Template SS confidence
		151	.	.	.	.	.				.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure																																																											.
Query SS confidence																																																											.
Query Sequence		A	I	Y	S	T	Y	I	L	P	A	V	I	K	E	G	D	P	K	N	V	G	F	V	V	P	T	E	K	N	S	A	V	Y	G	M	L	T	S	L	T	I	T	A	G	Q	K	T	E	E	T	E	A	A	E	K	F	V	.	T	F	M	E	Q	A	D	N	I	A	D	W	V	M	M	S	P	G	A	A	L	P
Query Conservation																																																											.
Alig confidence																																																											.																	.	.
Template Conservation																																																																												.	.
Template Sequence		I	I	N	G	L	W	A	I	K	S	Y	K	D	A	G	I	N	Y	G	V	A	P	I	P	E	L	E	P	G	V	P	A	K	P	F	V	G	V	Q	G	F	M	I	N	A	K	S	P	N	K	V	I	A	M	E	F	L	T	N	F	I	A	R	K	E	T	M	Y	K	I	Y	L	A	D	.	.	P	R	L	P
Template Known Secondary structure						G	G	G							T	T										B	S	B	T	T	B														B	T	T		T	T											T	T	T	S											S	.	.		S
Template Predicted Secondary structure																																																																												.	.
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.			.	.	.	.
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	K	A	V	V	T	T	A	T	W	K	D	N	D	V	I	K	A	L	G	E	L	P	N	Q	L	I	G	E	L	P	N	I	Q	V	F	G	A	V	G	D	K	N	F	T	R	M	G	D	V	T	G	S	G	V	V	S	S	M	V	H	N	V	T	V	G	K	A	D	L	S	T	T	L	Q	A	S	Q	K
Query Conservation
Alig confidence								.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	R	K	D	V	L	.	.	E	L	V	K	D	N	P	D	V	V	A	F	T	Q	S	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	G	T	P	M	P	N	V	P	E	M	A	P	V	W	S	A	M	G	D	A	L	S	I	I	I	N	G	Q	A	S	V	E	D	A	L	K	E	A	V	E
Template Known Secondary structure		S	B					.	.				T	T													.	.	.	.	.	.	.	.	.	.	.	.	.	.	T							S	G	G	G	T	T														T	T	S	S
Template Predicted Secondary structure								.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		306	.	.	.	310	.			.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.															.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
		422	.	.	.	.	.	.	.	430
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	D	E	L	I	E	Q	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	I	K	A	Q	I	E	K	G
Template Known Secondary structure									T	T
Template Predicted Secondary structure
Template SS confidence
		370	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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