Phyre 2 alignment of P76042 with c1ursA

Job Description P76042
Confidence 100.00% Date Thu Jan 5 12:17:42 GMT 2012

Rank 35 Aligned Residues 362

% Identity 16% Template c1ursA_

PDB info PDB header:maltose-binding protein Chain: A: PDB Molecule:maltose-binding protein; PDBTitle: x-ray structures of the maltose-maltodextrin binding2 protein of the thermoacidophilic bacterium alicyclobacillus3 acidocaldarius

Resolution 1.45 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																														.
Query SS confidence																																																														.
Query Sequence	S	I	E	F	M	H	S	S	V	E	Q	E	R	Q	A	V	I	S	K	L	I	A	R	F	E	K	E	N	P	G	I	T	V	K	Q	V	P	V	E	E	D	A	Y	N	T	K	V	I	T	L	S	R	S	G	S	L	P	E	V	I	E	.	T	S	H	D	Y	A	K	V	M	D	K	E	Q	L	I	D	R	K
Query Conservation																																																														.
Alig confidence										.																																																				.
Template Conservation										.
Template Sequence	T	I	T	V	W	S	W	Q	T	.	G	P	E	L	Q	D	V	K	Q	I	A	A	Q	W	A	K	A	H	G	D	K	V	I	V	V	D	Q	S	S	N	P	K	G	F	Q	F	Y	A	T	A	A	R	T	G	K	G	P	D	V	V	F	G	M	P	H	D	N	N	G	V	F	A	E	E	G	L	M	A	P	V
Template Known Secondary structure							S			.																												T	T		T	T		T	T								T	T				S							G	G	G							T	T		B
Template Predicted Secondary structure										.
Template SS confidence
	31	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.

	109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	V	A	T	V	I	S	N	V	G	E	G	A	F	Y	D	G	V	L	R	I	V	R	T	E	D	G	S	A	W	T	G	V	P	V	S	A	W	I	G	G	I	W	Y	R	K	D	V	L	A	K	A	G	L	E	E	P	K	N	W	Q	Q	L	L	D	V	A	Q	K	L	N	D	P	A	N	K	K	Y	G	I
Query Conservation
Alig confidence							.	.	.	.															.	.																									.	.	.	.
Template Conservation							.	.	.	.															.	.																									.	.	.	.
Template Sequence	P	S	G	V	L	N	.	.	.	.	T	G	L	Y	A	P	N	T	I	D	A	I	K	V	.	.	N	G	T	M	Y	S	V	P	V	S	V	Q	V	A	A	I	Y	Y	N	K	K	L	V	P	.	.	.	.	Q	P	P	Q	T	W	A	E	F	V	K	D	A	N	A	H	G	F	M	Y	D	Q	A	N	L	Y
Template Known Secondary structure		T	T	S			.	.	.	.	G	G	G	S							T	T			.	.	T	T				S														T	T	T		S	.	.	.	.	S				S																	T	T
Template Predicted Secondary structure							.	.	.	.															.	.																									.	.	.	.
Template SS confidence
	110	.	.	.	.	.					.	.	.	.	120	.	.	.	.	.	.	.	.	.			130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.					.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.

	189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.			.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.
Query SS confidence																																																											.	.
Query Sequence	A	L	P	T	A	E	S	V	L	T	E	Q	S	F	S	Q	F	A	L	S	N	Q	A	N	V	F	N	A	E	G	K	I	T	L	D	T	P	E	M	M	Q	A	L	T	Y	Y	R	D	L	T	A	N	T	M	P	G	S	N	.	.	D	I	M	E	V	K	D	A	F	M	N	G	T	A	P	M	A	I	Y	S
Query Conservation																																																											.	.
Alig confidence	.	.	.	.	.	.																																																					.	.
Template Conservation	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	F	D	Y	A	I	I	G	G	Y	G	G	Y	V	F	K	D	N	N	G	T	L	D	P	N	N	I	G	L	D	T	P	G	A	V	Q	A	Y	T	L	M	R	D	M	V	S	K	Y	H	W	M	T	P	S	T	N	G	S	I	A	K	A	E	F	L	A	G	K	I	G	M	Y	V	S	G
Template Known Secondary structure	.	.	.	.	.	.									T	T								T	T									S	S	S																T	S		S			T	T												T	T			S
Template Predicted Secondary structure	.	.	.	.	.	.
Template SS confidence
							180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.

	267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	T	Y	I	L	P	A	V	I	K	E	G	D	P	K	N	V	G	F	V	V	P	T	E	K	N	S	A	V	Y	G	M	L	T	S	L	T	I	T	A	G	Q	K	T	E	E	T	E	A	A	E	K	F	V	T	F	M	E	Q	A	D	N	I	A	D	W	V	M	M	S	P	G	A	A	L	P	V	N	K	A	V
Query Conservation
Alig confidence																																																																						.	.
Template Conservation																																																																						.	.
Template Sequence	P	W	D	T	A	D	I	E	K	A	K	I	D	F	G	V	T	P	W	P	T	L	P	N	G	K	H	A	T	P	F	L	G	V	I	T	A	F	V	N	K	E	S	K	T	Q	A	A	D	W	S	L	V	Q	A	L	T	S	A	Q	A	Q	Q	M	Y	F	R	D	S	.	.	Q	Q	I	P	A	L	L	S	V
Template Known Secondary structure	G	G	G							T	T												T	T	S															B	T	T		S													T	S												.	.					S	S
Template Predicted Secondary structure																																																																						.	.
Template SS confidence
	254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.			.	.	.	.	.	.	.	330	.

	347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	T	T	A	T	W	K	D	N	D	V	I	K	A	L	G	E	L	P	N	Q	L	I	G	E	L	P	N	I	Q	V	F	G	A	V	G	D	K	N	F	T	R	M	G	D	V	T	G	S	G	V	V	S	S	M	V	H	N	V	T	V	G	K	A	D	L	S	T	T	L	Q	A	S	Q	K	K	L	D	E
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Template Sequence	Q	R	S	S	A	V	Q	S	S	P	T	F	K	A	F	V	E	Q	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	Y	A	V	P	M	P	N	I	P	Q	M	Q	A	V	W	Q	A	M	.	S	I	L	Q	N	I	I	A	G	K	V	S	P	E	Q	G	A	K	D	F	V	Q	N	I	Q	K
Template Known Secondary structure		T	S					T											G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G							S	T									T	.	T								T	S	S
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Template SS confidence
	332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350															.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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