Job Description Q1PI90 Confidence 100.00% Date Thu Jan 5 12:33:34 GMT 2012 Rank 2 Aligned Residues 227 % Identity 19% Template d2fgqx1 SCOP info Transmembrane beta-barrels Porins Porin Resolution 1.45

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	D	Q	T	Y	M	R	L	G	F	K	G	E	T	Q	V	T	D	Q	L	T	G	Y	G	Q	W	E	Y	Q	I	Q	G	N	S	A	E	N	E	N	N	S	W	T	R	V	A	F	A	G	L	K	F	Q	D	V	G	S	F	D	Y	G	R	N	Y	G	V	V	Y	D	V	T	S	W	T	D	V	L	P	E
Query Conservation
Alig confidence																																																						.
Template Conservation																																																						.
Template Sequence		T	S	G	A	S	T	S	R	L	G	L	R	G	T	E	D	L	G	G	G	L	K	A	G	F	W	L	E	G	E	I	F	G	D	D	G	N	A	S	G	F	N	F	K	R	R	S	T	V	S	L	S	.	G	N	F	G	E	V	R	L	G	R	D	L	V	P	T	S	Q	K	L	T	S	Y	D	L	F	S	A
Template Known Secondary structure				S	S	S														T	T													T	T	T	T	S	T	T						S								.		T	T						S	S										G	G	G		T	T	T	T
Template Predicted Secondary structure																																																						.
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.										90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.
Query Sequence		F	G	G	D	T	Y	G	S	D	.	.	.	.	.	.	.	.	.	N	F	M	Q	Q	R	G	N	G	F	A	T	Y	R	N	T	D	F	F	G	L	V	D	G	L	N	F	A	V	Q	Y	Q	G	K	N	G	N	P	S	G	E	G	V	T	N	N	G	R	D	A	L	R	Q	N	G	D	G	V	G	G	S	I
Query Conservation											.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.																				.	.	.	.																									.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.																									.	.	.	.	.	.	.	.	.
Template Sequence		T	G	I	G	P	F	M	G	F	R	N	W	A	A	G	Q	G	A	D	D	N	G	I	R	A	N	N	L	I	S	Y	Y	T	P	N	F	G	.	.	.	.	G	F	N	A	G	F	G	Y	A	F	D	E	K	Q	T	I	G	T	A	D	S	V	G	R	.	.	.	.	.	.	.	.	.	Y	I	G	G	Y	V
Template Known Secondary structure			S	S	S	S				S	S		T	T				S	T	T	T	T	S	S			S	S									B	T	.	.	.	.	T											T	T			B	T	T	B	S	S	T	T		.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																							.	.	.	.																									.	.	.	.	.	.	.	.	.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.					.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170										.	.	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Y	D	Y	E	G	F	G	I	G	G	A	I	S	S	S	K	R	T	D	A	Q	N	T	A	A	Y	I	G	N	G	D	R	A	E	T	Y	T	G	G	L	K	Y	D	A	N	N	I	Y	L	A	A	Q	Y	T	Q	T	Y	N	A	T	R	V	G	S	L	G	W	A	N	K	A	Q	N	F	E	A	V	A	Q
Query Conservation
Alig confidence																											.	.	.	.	.	.	.																																					.	.	.
Template Conservation																											.	.	.	.	.	.	.																																					.	.	.
Template Sequence		A	Y	D	N	G	P	L	S	A	S	L	G	L	A	Q	Q	K	T	A	V	G	G	L	A	T	.	.	.	.	.	.	.	D	R	D	E	I	T	L	G	A	S	Y	N	F	G	V	A	K	L	S	G	L	L	Q	Q	T	K	F	K	R	D	I	G	G	D	I	K	.	.	.	T	N	S	Y	M	L	G	A	S
Template Known Secondary structure						S	S															T	T				.	.	.	.	.	.	.														S	S															T	T	S					.	.	.
Template Predicted Secondary structure																											.	.	.	.	.	.	.																																					.	.	.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.								.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.				.	.	240	.	.	.	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	Q	F	D	F	G	L	R	P	S	L	A	Y	L	Q	S	K	G	K	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	P	V	G	G	V	G	E	V	K	L	Q	Y	A	L	Y	D	Q	K	A
Template Known Secondary structure					T	T	T													G	G
Template Predicted Secondary structure
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions