Job Description Q1PI90 Confidence 1.55% Date Thu Jan 5 12:33:34 GMT 2012 Rank 63 Aligned Residues 247 % Identity 11% Template d1a0tp_ SCOP info Transmembrane beta-barrels Porins Maltoporin-like Resolution 2.40

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.					.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.								.	.	.	.	.	60	.	.	.	.	.	.		.	.
Predicted Secondary structure																																							.	.	.	.																		.	.	.	.	.	.	.													.
Query SS confidence																																							.	.	.	.																		.	.	.	.	.	.	.													.
Query Sequence		D	G	D	Q	T	Y	M	R	L	G	F	K	G	E	T	Q	V	T	D	Q	L	T	G	Y	G	Q	W	E	Y	Q	I	Q	G	N	S	A	E	.	.	.	.	N	E	N	N	S	W	T	R	V	A	F	A	G	L	K	F	Q	.	.	.	.	.	.	.	D	V	G	S	F	D	Y	G	R	N	Y	G	.	V	V
Query Conservation																																							.	.	.	.																		.	.	.	.	.	.	.													.
Alig confidence																																							.	.	.	.																		.	.	.	.	.	.	.													.
Template Conservation
Template Sequence		N	Q	A	D	T	Y	V	E	M	N	L	E	H	K	Q	T	L	D	N	G	A	T	T	R	F	K	V	M	V	A	D	G	Q	T	S	Y	N	D	W	T	A	S	T	S	D	L	N	V	R	Q	A	F	V	E	L	G	N	L	P	T	F	A	G	P	F	K	G	S	T	L	W	A	G	K	R	F	D	R	D	N
Template Known Secondary structure					S														T	T	S																	S	S			G	G	G														S		T	T			G	G	G	T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.																			.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	D	V	T	S	W	T	D	V	L	P	E	F	G	G	D	T	Y	G	S	D	N	F	M	Q	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	N	G	F	A	T	Y	R	N	T	D	F	F	G	L	V	D	G	L	N	F	A	V	Q	Y	Q	G	K	N	G	N	P	S	G	E
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	D	I	H	W	I	D	S	D	V	V	F	L	A	G	T	G	G	G	I	Y	D	V	K	W	N	D	G	L	R	S	N	F	S	L	Y	G	R	N	F	G	D	I	D	D	S	S	N	S	V	Q	N	Y	I	L	T	M	N	H	F	A	G	P	L	Q	M	M	V	S	G	L	R	A	K	D	N	D	E	R	K
Template Known Secondary structure					G	G	G	T					B														T	T	T															T	T		G	G	G														T	T											T	T	G	G	G		B
Template Predicted Secondary structure
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.								.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190				.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure																											.	.	.	.	.	.	.																																				.	.	.
Query SS confidence																											.	.	.	.	.	.	.																																				.	.	.
Query Sequence		G	V	T	N	N	G	R	D	A	L	R	Q	N	G	D	G	V	G	G	S	I	T	Y	D	Y	.	.	.	.	.	.	.	E	G	F	G	I	G	G	A	I	S	S	S	K	R	T	D	A	Q	N	T	A	A	Y	I	G	N	G	D	R	A	E	T	Y	T	G	.	.	.	G	L	K	Y	D	A	N	N	I	Y
Query Conservation																											.	.	.	.	.	.	.																																				.	.	.
Alig confidence																											.	.	.	.	.	.	.																																				.	.	.
Template Conservation
Template Sequence		D	S	N	G	N	L	A	K	G	D	A	A	N	T	G	V	H	A	L	L	G	L	H	N	D	S	F	Y	G	L	R	D	G	S	S	K	T	A	L	L	Y	G	H	G	L	G	A	E	V	K	G	I	G	S	D	G	A	L	R	P	G	A	D	T	W	R	I	A	S	Y	G	T	T	P	L	S	E	N	W	S
Template Known Secondary structure			S	S	S	S	B	S		S	S			S														S	T	T	S	S														T	T		S		S	B	T	T			T	T			T	T														S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.			.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.
Query SS confidence																																											.	.
Query Sequence		L	A	A	Q	Y	T	Q	T	Y	N	A	T	R	V	G	S	L	G	W	A	N	K	A	Q	N	F	E	A	V	A	Q	Y	Q	F	D	F	G	L	R	P	S	.	.	L	A	Y	L	Q	S	K
Query Conservation																																											.	.
Alig confidence																		.																									.	.
Template Conservation																		.
Template Sequence		V	A	P	A	M	L	A	Q	R	S	K	D	R	Y	A	D	.	G	D	S	Y	Q	W	A	T	F	N	L	R	L	I	Q	A	I	N	Q	N	F	A	L	A	Y	E	G	S	Y	Q	Y	M	D
Template Known Secondary structure													S	S	S	S	T	.	T																S	S	S	S
Template Predicted Secondary structure																		.
Template SS confidence
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.		.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions