Job Description Q1PI90 Confidence 34.77% Date Thu Jan 5 12:33:34 GMT 2012 Rank 30 Aligned Residues 202 % Identity 11% Template c3rbhC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:alginate production protein alge; PDBTitle: structure of alginate export protein alge from pseudomonas aeruginosa Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.						.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.					.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.																						.	.	.	.
Query SS confidence																				.	.	.	.	.																						.	.	.	.
Query Sequence		V	T	D	Q	L	T	G	Y	G	Q	W	E	Y	Q	I	Q	G	N	.	.	.	.	.	S	A	E	N	E	N	N	S	W	T	R	V	A	F	A	G	L	K	F	Q	D	.	.	.	.	V	G	S	F	D	Y	G	R	N	Y	G	V	V	Y	D	V	T	S	W	T	D	V	L	P	E	F	G	G	D	T	Y	G
Query Conservation																				.	.	.	.	.																						.	.	.	.
Alig confidence																				.	.	.	.	.																						.	.	.	.			.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																				.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	W	G	D	W	S	A	Y	F	X	G	Q	A	V	A	A	T	D	T	I	E	T	D	T	L	P	D	K	S	Y	L	A	A	R	E	F	W	V	D	Y	A	G	L	T	A	Y	P	G	E	H	.	L	R	F	G	R	Q	R	L	R	E	D	S	G	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				T	T													S	S	S									S															S	S	S		T	T			.											T	T	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																				.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	D	N	F	M	Q	Q	R	G	N	G	F	A	T	Y	R	N	T	D	F	F	G	L	V	D	G	L	N	F	A	V	Q	Y	Q	G	K	N	G	N	P	S	G	E	G	V	T	N	N	G	R	D	A	L	R	Q	N	G	D	G	V	G	G	S	I	T	Y	D	Y	E	G	F	G	I	G	G	A	I	S	S	S
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	W	Q	D	T	N	I	E	A	L	N	W	S	F	E	T	T	L	L	N	A	H	A	G	V	A	Q	R	F	S	E	Y	R	T	D	L	D	E	L	A	P	E	D	K	D	R	T	H	V	F	G	D	I	S	T	Q	W	A	P	H	H	R	I	G	V	R	I	H	H	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	S	B														S	S											S				B	T	T			S			T	T	T	T	T														T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.						.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure																																	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.
Query Sequence		K	R	T	D	A	Q	N	T	A	A	Y	I	G	N	G	D	R	A	E	T	Y	T	G	G	L	K	Y	D	A	N	N	.	.	.	.	.	I	Y	L	A	A	Q	Y	T	Q	T	Y	N	A	T	R	V	G	S	L	G	W	A	N	K	A	Q	N	F	E	A	V	A	Q	Y	Q	F	D	F	G	L	R	P	S	L
Query Conservation																																	.	.	.	.	.
Alig confidence														.	.	.	.																.	.	.	.	.																				.	.
Template Conservation														.	.	.	.																																								.	.
Template Sequence		D	D	S	D	K	T	Y	T	G	Q	L	T	.	.	.	.	W	L	G	I	E	A	T	G	D	A	Y	N	Y	R	S	S	X	P	L	N	Y	W	A	S	A	T	W	L	T	G	D	R	D	N	L	T	Q	S	G	.	.	D	V	N	A	F	G	V	D	L	G	L	R	W	N	I	D	E	Q	W	K	A	G	V
Template Known Secondary structure							S							.	.	.	.									S	T	T		T	T		S		S																						.	.																S	S	S
Template Predicted Secondary structure														.	.	.	.																																								.	.
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240					.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.			280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
		243	.	.	.	.	.	.	250	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Y	L	Q	S	K	G	K	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	Y	A	R	G	S	G	G	G
Template Known Secondary structure										S
Template Predicted Secondary structure
Template SS confidence
		329	330	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions