Job Description Q1PI90 Confidence 100.00% Date Thu Jan 5 12:33:34 GMT 2012 Rank 3 Aligned Residues 241 % Identity 56% Template c3nsgA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein f; PDBTitle: crystal structure of ompf, an outer membrane protein from salmonella2 typhi Resolution 2.79 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.			.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.
Query SS confidence																																							.	.
Query Sequence		D	G	D	Q	T	Y	M	R	L	G	F	K	G	E	T	Q	V	T	D	Q	L	T	G	Y	G	Q	W	E	Y	Q	I	Q	G	N	S	A	E	.	.	N	E	N	N	S	W	T	R	V	A	F	A	G	L	K	F	Q	D	V	G	S	F	D	Y	G	R	N	Y	G	V	V	Y	D	V	T	S	W	T	D	V	L
Query Conservation																																							.	.
Alig confidence																																							.	.
Template Conservation
Template Sequence		N	A	D	Q	T	Y	A	Q	I	G	F	K	G	E	T	Q	I	N	T	D	L	T	G	F	G	Q	W	E	Y	R	T	K	A	D	R	A	E	G	E	Q	Q	N	S	N	L	V	R	L	A	F	A	G	L	K	Y	A	E	V	G	S	I	D	Y	G	R	N	Y	G	I	V	Y	D	V	E	S	Y	T	D	X	A
Template Known Secondary structure																		S	S	S	S														S	S		T	T			S	T	T													T	T	T											T	T						T	T			S
Template Predicted Secondary structure
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		79	80	.	.				.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure						.	.	.
Query SS confidence						.	.	.
Query Sequence		P	E	F	G	.	.	.	G	D	T	Y	G	S	D	N	F	M	Q	Q	R	G	N	G	F	A	T	Y	R	N	T	D	F	F	G	L	V	D	G	L	N	F	A	V	Q	Y	Q	G	K	N	G	N	P	S	G	E	G	V	T	N	N	G	R	D	A	L	R	Q	N	G	D	G	V	G	G	S	I	T	Y	D	Y
Query Conservation						.	.	.
Alig confidence						.	.	.																																																							.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.
Template Sequence		P	Y	F	S	G	E	T	W	G	G	A	Y	T	D	N	Y	X	T	S	R	A	G	G	L	L	T	Y	R	N	S	D	F	F	G	L	V	D	G	L	S	F	G	I	Q	Y	Q	G	K	N	Q	D	N	H	S	I	N	S	Q	N	G	D	.	.	.	.	.	.	.	.	.	G	V	G	Y	T	X	A	Y	E	F
Template Known Secondary structure		S	S	S	S	S		S	T	T	T	S	S	S	S	S	T	T	S	S											S	S	S	S	S	S		S	S											B		S	S	S		G	G	G		B		S	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.										.	.	.	.	.	.	.	.	180	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.						.	.	.	.	.	.	.	.	230
Predicted Secondary structure																																																																				.	.	.	.	.
Query SS confidence																																																																				.	.	.	.	.
Query Sequence		E	G	F	G	I	G	G	A	I	S	S	S	K	R	T	D	A	Q	N	T	A	A	Y	I	G	N	G	D	R	A	E	T	Y	T	G	G	L	K	Y	D	A	N	N	I	Y	L	A	A	Q	Y	T	Q	T	Y	N	A	T	R	V	G	S	L	G	W	A	N	.	.	.	.	.	K	A	Q	N	F	E	A	V	A
Query Conservation																																																																				.	.	.	.	.
Alig confidence																												.	.																																							.	.	.	.	.
Template Conservation																												.	.
Template Sequence		D	G	F	G	V	T	A	A	Y	S	N	S	K	R	T	N	D	Q	Q	D	R	D	G	N	G	D	.	.	R	A	E	S	R	A	V	G	A	K	Y	D	A	N	N	V	Y	L	A	A	V	Y	A	E	T	R	N	X	S	I	V	E	N	T	V	T	D	T	V	E	X	A	N	K	T	Q	N	L	E	V	V	A
Template Known Secondary structure		T	T														S	T	T	S	S	S	S	S			S	.	.														T	T											S	S							T	T	T							S
Template Predicted Secondary structure																												.	.
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.			.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Y	Q	F	D	F	G	L	R	P	S	L	A	Y	L	Q	S	K	G	K	N	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	Y	Q	F	D	F	G	L	R	P	A	I	S	Y	V	Q	S	K	G	K	Q	L
Template Known Secondary structure						T	T	S														S
Template Predicted Secondary structure
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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