Job Description Q1PI90 Confidence 92.15% Date Thu Jan 5 12:33:34 GMT 2012 Rank 17 Aligned Residues 204 % Identity 8% Template c3jtyB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:benf-like porin; PDBTitle: crystal structure of a benf-like porin from pseudomonas fluorescens2 pf-5 Resolution 2.58 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.									.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.
Query Sequence		Q	L	T	G	Y	G	Q	W	E	Y	Q	I	Q	G	N	S	A	E	.	.	.	.	.	.	.	.	N	E	N	N	S	W	T	R	V	A	F	A	G	L	K	F	Q	D	V	G	S	F	D	Y	G	R	N	Y	G	V	V	Y	D	V	T	S	W	T	D	V	L	P	E	F	G	G	D	T	Y	G	S	D	N	F
Query Conservation																				.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.																			.											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	M	D	V	L	G	L	Y	S	L	K	L	D	G	G	K	G	T	G	G	T	Q	L	L	P	L	P	A	D	N	F	G	R	L	G	V	A	F	K	A	R	L	S	Q	.	T	E	V	K	V	G	E	W	M	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	L	P	I	L	R	S	D	D	G	R
Template Known Secondary structure																	T	T	S			S	S	S	S					S														T	T	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T						S	S
Template Predicted Secondary structure																																														.											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.															.	140	.	.	.	.	.	.	.	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	Q	Q	R	G	N	G	F	A	T	Y	R	N	T	D	F	F	G	L	V	D	G	L	N	F	A	V	Q	Y	Q	G	K	N	G	N	P	S	G	E	G	V	T	N	N	G	R	D	A	L	R	Q	N	G	D	G	V	G	G	S	I	T	Y	D	Y	E	G	F	G	I	G	G	A	I	S	S	S	K	R	T	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	L	P	Q	T	F	R	G	G	Q	I	T	S	K	E	I	A	G	L	T	L	Y	G	G	Q	F	R	A	N	S	P	R	D	D	S	S	M	S	D	M	S	M	F	G	K	A	A	F	T	S	D	R	F	N	F	Q	G	A	E	Y	A	F	N	D	K	R	T	Q	I	A	L	W	N	A	Q	L	K	D	I	Y
Template Known Secondary structure		S	S														S	T	T														T	T		S	S		B					T	T							S												T	T	T	T											T	T	T
Template Predicted Secondary structure
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	N	T	A	A	Y	I	G	N	G	D	R	A	E	T	Y	T	G	G	L	K	Y	D	A	N	N	I	Y	L	A	A	Q	Y	T	Q	T	Y	N	A	T	R	V	G	S	L	G	W	A	N	K	A	Q	N	F	E	A	V	A	Q	Y	Q	F	D	F	G	L	R	P	S	L	A	Y	L	Q	S	K	G	K	N
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																																																					.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.																																																					.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	S	Q	Q	F	I	N	L	I	H	S	Q	P	L	G	D	W	T	L	G	A	N	L	G	F	F	Y	G	K	E	D	G	S	A	R	A	G	D	M	E	N	R	T	W	S	G	L	F	S	A	K	Y	G	.	G	N	T	F	Y	V	G	L	Q	K	L	T	G	D	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.														S	S																T	T		T	T																	T	.	T													S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																																																					.
Template SS confidence
														235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.		.	.	.	290	.	.	.	.	.	.	.	.	.	300	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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