Job Description Q1PI90 Confidence 89.10% Date Thu Jan 5 12:33:34 GMT 2012 Rank 19 Aligned Residues 219 % Identity 11% Template c2qtkB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:probable porin; PDBTitle: crystal structure of the outer membrane protein opdk from2 pseudomonas aeruginosa Resolution 2.80 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.						.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.																			.	.	.	.	.
Query SS confidence																	.																			.	.	.	.	.
Query Sequence		T	Y	M	R	L	G	F	K	G	E	T	Q	V	T	D	.	Q	L	T	G	Y	G	Q	W	E	Y	Q	I	Q	G	N	S	A	E	.	.	.	.	.	N	E	N	N	S	W	T	R	V	A	F	A	G	L	K	F	Q	D	V	G	S	F	D	Y	G	R	N	Y	G	V	V	Y	D	V	T	S	W	T	D	V	L
Query Conservation																	.																			.	.	.	.	.
Alig confidence																	.																			.	.	.	.	.																			.											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																											.											.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	G	F	I	L	K	F	S	S	G	Y	T	P	G	T	V	G	V	G	L	D	A	I	G	L	F	G	V	K	L	N	N	S	E	L	L	P	L	H	A	A	D	N	Y	G	R	V	G	V	A	A	K	L	R	V	S	A	.	S	E	L	K	I	G	E	M	L	P	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure														S	S	S	S																		S	S	S						S														S	S	.											.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																											.											.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.		.	.	.	.	100	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	F	G	G	D	T	Y	G	S	D	N	F	M	Q	Q	R	G	N	G	F	A	T	Y	R	N	T	D	F	F	G	L	V	D	G	L	N	F	A	V	Q	Y	Q	G	K	N	G	N	P	S	G	E	G	V	T	N	N	G	R	D	A	L	R	Q	N	G	D	G	V	G	G	S	I	T	Y	D	Y	E	G	F
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	D	I	P	L	L	R	Y	D	D	G	R	L	L	P	Q	T	F	R	G	F	A	V	V	S	R	E	L	P	G	L	A	L	Q	A	G	R	F	D	A	V	S	L	R	N	S	A	D	M	Q	D	L	S	A	W	S	A	P	T	Q	K	S	D	G	F	N	Y	A	G	A	E	Y	R	F	N	R	E	R	T
Template Known Secondary structure		.	.			T	T						S	S	S	S														S	T	T														T	T		S	S		B				B	T	T		T	T	S			S												T	T	T	T
Template Predicted Secondary structure		.	.
Template SS confidence
				116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	G	G	A	I	S	S	S	K	R	T	D	A	Q	N	T	A	A	Y	I	G	N	G	D	R	A	E	T	Y	T	G	G	L	K	Y	D	A	N	N	I	Y	L	A	A	Q	Y	T	Q	T	Y	N	A	T	R	V	G	S	L	G	W	A	N	K	A	Q	N	F	E	A	V	A	Q	Y	Q	F	D	F	G	L
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.																																																					.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.																																																					.
Template Sequence		Q	L	G	L	W	H	G	Q	L	E	D	V	Y	.	.	.	.	.	.	.	.	.	.	.	.	R	Q	S	Y	A	N	L	L	H	K	Q	R	V	G	D	W	T	L	G	A	N	L	G	L	F	V	D	R	D	D	G	A	A	R	A	G	E	I	D	S	H	T	V	Y	G	L	F	S	A	G	I	G	.	L	H
Template Known Secondary structure											T	T	T		.	.	.	.	.	.	.	.	.	.	.	.														T	T																T	T		T	T																	T	.	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.																																																					.
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.													.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.		.	260
		239	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	P	S	L	A	Y	L	Q	S	K	G	K	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	F	Y	L	G	L	Q	K	V	G	G	D	S
Template Known Secondary structure													S	S
Template Predicted Secondary structure
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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