Job Description Q1PI90 Confidence 19.46% Date Thu Jan 5 12:33:34 GMT 2012 Rank 34 Aligned Residues 209 % Identity 11% Template c2odjA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:porin d; PDBTitle: crystal structure of the outer membrane protein oprd from pseudomonas2 aeruginosa Resolution 2.90 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	F	K	G	E	T	Q	V	T	D	Q	L	T	G	Y	G	Q	W	E	Y	Q	I	Q	G	N	S	A	E	N	E	N	N	S	W	T	R	V	A	F	A	G	L	K	F	Q	D	V	G	S	F	D	Y	G	R	N	Y	G	V	V	Y	D	V	T	S	W	T	D	V	L	P	E	F	G	G	D	T	Y	G	S	D
Query Conservation
Alig confidence																												.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	F	Q	L	Q	S	S	E	F	E	G	L	D	L	E	A	G	H	F	T	E	E	L	Y	A	T	.	.	Y	A	G	E	T	A	K	S	A	D	F	I	G	G	R	Y	A	I	T	D	N	L	S	A	S	L	Y	G	A	E	L	E	D	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										S	T	T															T	.	.	T	T					S											S	S	S	S											T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																												.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.			.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	F	M	Q	Q	R	G	N	G	F	A	T	Y	R	N	T	D	F	F	G	L	V	D	G	L	N	F	A	V	Q	Y	Q	G	K	N	G	N	P	S	G	E	G	V	T	N	N	G	R	D	A	L	R	Q	N	G	D	G	V	G	G	S	I	T	Y	D	Y	E	G	F	G	I	G	G	A	I	S	S	S	K	R
Query Conservation
Alig confidence		.	.	.																																			.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.																																			.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	Y	R	Q	Y	Y	L	N	S	N	Y	T	I	P	L	A	S	D	Q	S	L	G	F	D	F	N	I	Y	R	T	N	D	E	G	K	.	.	.	.	.	.	.	.	.	.	A	K	A	G	D	I	S	N	T	T	W	S	L	A	A	A	Y	T	L	D	A	H	T	F	T	L	A	Y	Q	K	V	H	G
Template Known Secondary structure		.	.	.																T	T																T	T	.	.	.	.	.	.	.	.	.	.		S	S																	T	T												S
Template Predicted Secondary structure		.	.	.																																			.	.	.	.	.	.	.	.	.	.
Template SS confidence
					210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.											.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
		170	.													.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.						.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.												.	.	.	.	.	.	220	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	D	.	.	.	.	.	.	.	.	.	.	.	.	A	Q	N	T	A	A	Y	I	G	N	G	D	R	A	E	T	Y	T	G	G	L	K	Y	D	A	.	.	.	.	.	N	N	I	Y	L	A	A	Q	Y	T	Q	T	Y	N	A	T	R	.	.	.	.	.	.	.	.	.	.	.	V	G	S	L	G	W	A	N
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	Q	P	F	D	Y	I	G	F	G	S	I	F	L	A	N	S	V	Q	Y	S	D	F	N	G	P	G	E	K	S	W	Q	A	R	Y	D	L	N	L	A	S	Y	G	V	P	G	L	T	F	X	V	R	Y	I	N	G	K	D	I	D	G	T	K	X	S	D	N	N	V	G	Y	K	N	Y	G	Y	G	E	D	G
Template Known Secondary structure		S	S											S	S	T	T			S	S						T	T												T	T	S	S	S		T	T																T	T			S	S		T	T	T	S	S	S				S	S
Template Predicted Secondary structure
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
		222	.	.	.	.	.	.	.	230	.	.	.	.	.					.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure																.	.	.	.
Query SS confidence																.	.	.	.
Query Sequence		K	A	Q	N	F	E	A	V	A	Q	Y	Q	F	D	.	.	.	.	F	G	L	R	P	S	L	A	Y	L	Q	S	K	G	K	N
Query Conservation																.	.	.	.
Alig confidence																.	.	.	.
Template Conservation
Template Sequence		K	H	H	E	T	N	L	E	A	K	Y	V	V	Q	S	G	P	A	K	D	L	S	F	R	I	R	Q	A	W	H	R	A	N	A
Template Known Secondary structure																S	S	T	T	T	T														T
Template Predicted Secondary structure
Template SS confidence
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions