Job Description P16677 Confidence 100.00% Date Thu Jan 5 11:35:18 GMT 2012 Rank 59 Aligned Residues 226 % Identity 26% Template c3pihA_ PDB info PDB header:hydrolase/dna Chain: A: PDB Molecule:uvrabc system protein a; PDBTitle: t. maritima uvra in complex with fluorescein-modified dna Resolution 2.90 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.		.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure																														.																																																	.	.	.
Query SS confidence																														.																																																	.	.	.
Query Sequence		L	H	A	V	D	L	N	I	H	H	G	E	M	V	A	L	L	G	P	S	G	S	G	K	S	T	L	L	.	R	H	L	S	G	L	I	T	G	D	K	S	V	G	S	H	I	E	L	L	G	R	T	V	Q	R	E	G	R	L	A	R	D	I	R	K	S	R	A	H	T	G	Y	I	F	Q	Q	F	.	.	.
Query Conservation																														.																																																	.	.	.
Alig confidence																														.											.	.	.																	.	.	.	.	.															.	.	.
Template Conservation																																									.	.	.																	.	.	.	.	.
Template Sequence		L	K	N	I	D	V	E	I	P	L	G	V	F	V	C	V	T	G	V	S	G	S	G	K	S	S	L	V	M	E	T	L	Y	P	A	L	M	N	L	.	.	.	L	H	K	T	K	L	P	A	G	E	F	D	S	I	E	G	.	.	.	.	.	H	E	N	I	D	K	M	I	A	I	D	Q	S	P	I	G	R
Template Known Secondary structure				S							S	S	S							S	T	T	S	S								T									.	.	.												S					.	.	.	.	.	G	G	G									S
Template Predicted Secondary structure																																									.	.	.																	.	.	.	.	.
Template SS confidence
		600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.				.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.						.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.
																																																												96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	L	V	N	R	L	S	V	L	E	N	V	L	I	G	A	L	G	S	T	P	F
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	P	R	S	N	P	A	T	Y	T	K	V	F	D	E	I	R	S	L	F	A	M	T	P	A	A	K	A	R	G	Y	N	K	S	R	F	S	F	N	L	K	G	G	R	C	E	A	C	Q	G	Q	G	Y	V	K	I	E	M	L	F	L	P	D	V	Y	V	E	C	D	V	C	K	G	K	R	Y	N	R	E	T
Template Known Secondary structure			T	T							S	S										T	T	S						S	S			G	G	G	G		T	T	S	T	T	T	B		T	T	T	T	T	S	S							T	T	S								T	T	T	T	T	S		B		T	T	G
Template Predicted Secondary structure
Template SS confidence
		672	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.
		118	.	120	.	.	.	.	.	.	.																			.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.				.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.																												.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.																												.	.	.
Query Sequence		W	R	T	C	F	S	W	F	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Q	K	Q	R	A	L	Q	A	L	T	R	V	G	M	V	H	F	.	A	H	Q	R	V	S	T	L	S	G	G	Q	Q	Q	R	V	A	I	A	R	A	L	M	Q	Q	A	K	.	.	.	V	I	L
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.																												.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.																												.	.	.
Template Conservation
Template Sequence		L	E	I	T	Y	K	G	K	N	I	S	D	I	L	D	M	T	V	D	E	A	L	E	F	F	K	N	I	P	S	I	K	R	T	L	Q	V	L	H	D	V	G	L	G	Y	V	K	L	G	Q	P	A	T	T	L	S	G	G	E	A	Q	R	I	K	L	A	S	E	L	R	K	R	D	T	G	R	T	L	Y	I
Template Known Secondary structure		G	G			B	T	T	B							S	S	B								T	T	T														T	T	G	G	G	S	B	T	T			S	T	T																T	S				S	S
Template Predicted Secondary structure
Template SS confidence
		752	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.							.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.
Query Sequence		A	D	E	P	I	A	S	L	D	P	E	S	A	R	I	V	M	D	T	L	R	D	I	N	Q	N	D	G	I	T	V	V	V	T	L	H	Q	V	D	Y	A	L	R	Y	C	E	R	I	V	A	L	.	.	.	.	.	.	R	Q	G	H	V	F	Y	D	G	S	S	Q	Q	F	D	N	E	R	F	D	H	L	Y
Query Conservation																																																					.	.	.	.	.	.
Alig confidence																												.															.										.	.	.	.	.	.
Template Conservation																												.															.
Template Sequence		L	D	E	P	T	V	G	L	H	F	E	D	V	R	K	L	V	E	V	L	H	R	L	V	D	R	.	G	N	T	V	I	V	I	E	H	N	L	D	V	I	.	K	N	A	D	H	I	I	D	L	G	P	E	G	G	K	E	G	G	Y	I	V	A	T	G	T	P	E	E	I	A	K	N	P	H	S	Y	T	G
Template Known Secondary structure				S	T	T	T	T																			T	.	T														.	T	T		S							S	S	S	G	G	G									S						S		T	T
Template Predicted Secondary structure																												.															.
Template SS confidence
		832	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.		.	.	860	.	.	.	.	.	.	.	.	.	870	.		.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.
		250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	I	N	R	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	F	L	K	N	V
Template Known Secondary structure					T	T	T
Template Predicted Secondary structure
Template SS confidence
		910	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions