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Job DescriptionP16677
Confidence100.00%DateThu Jan 5 11:35:18 GMT 2012
Rank39Aligned Residues224
% Identity24%Templatec3gd7C_
PDB info PDB header:hydrolaseChain: C: PDB Molecule:fusion complex of cystic fibrosis transmembrane PDBTitle: crystal structure of human nbd2 complexed with n6-2 phenylethyl-atp (p-atp)
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.... .....20.........30.........40.........50.........60.........70.........80
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Query Sequence  TIIRVEKLAKTF. . NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSVGSHIELLGRTVQREGRLARD
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Template Sequence  GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT. . . . EGEIQIDGVSWDSITL. . . .
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SSTTS

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   1208.1210.........1220.........1230.........1240.........1250.........1260... ......1270.........
 
   81........90.........100.........110.........120.........130.........140.........150.........160
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Query Sequence  IRKSRAHTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTGEQKQRALQALTRVGMVHFAHQRVSTLSGGQQQR
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Template Sequence  . EQWRKAFGVIPQKVFIFSG. TFRKNLDPNAAHSDQEIWKVADEVGLRSV. . . . IEQFPGKLDFVLVDGGCVLSHGHKQL
Template Known Secondary structure  .GGGS





SS.B
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TTT....GGGSTTGGG
B

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   1280.........1290........ .1300.........1310.........1320....... ..1330.........1340.........1350...
 
   161........170.........180.........190.........200.........210.........220.........230.........240
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Query Sequence  VAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF
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Template Sequence  MCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQ. . . AFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILEL
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   1354.....1360.........1370.........1380.........1390 .........1400.........1410.........1420.........1430
 
   241..
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Query Sequence  DNE
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Template Sequence  YHY
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   1431..
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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