Job Description P16677 Confidence 100.00% Date Thu Jan 5 11:35:18 GMT 2012 Rank 22 Aligned Residues 226 % Identity 28% Template c3g5uB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:multidrug resistance protein 1a; PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding Resolution 3.80 Å

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		5	.	.	.	.	10	.	.	.	.				.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure												.	.	.
Query SS confidence												.	.	.
Query Sequence		I	R	V	E	K	L	A	K	T	F	.	.	.	N	Q	H	Q	A	L	H	A	V	D	L	N	I	H	H	G	E	M	V	A	L	L	G	P	S	G	S	G	K	S	T	L	L	R	H	L	S	G	L	I	T	G	D	K	S	V	G	S	H	I	E	L	L	G	R	T	V	Q	R	E	G	R	L	A	R	D	I
Query Conservation												.	.	.
Alig confidence												.	.	.																																												.	.	.																	.	.	.	.	.
Template Conservation																																																										.	.	.																	.	.	.	.	.
Template Sequence		V	Q	F	S	G	V	V	F	N	Y	P	T	R	P	S	I	P	V	L	Q	G	L	S	L	E	V	K	K	G	Q	T	L	A	L	V	G	S	S	G	C	G	K	S	T	V	V	Q	L	L	E	R	F	Y	D	P	M	.	.	.	A	G	S	V	F	L	D	G	K	E	I	K	Q	L	N	V	.	.	.	.	.
Template Known Secondary structure												S		G	G	G			S			S							S	S	S							S	S	S	T	T									T	T	S	S			S	.	.	.						S	S	S	S		B	T	S	S			.	.	.	.	.
Template Predicted Secondary structure																																																										.	.	.																	.	.	.	.	.
Template SS confidence
		1031	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.				.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																								.	.	.	.	.	.	.	.	.	.
Query Sequence		R	K	S	R	A	H	T	G	Y	I	F	Q	Q	F	N	L	V	N	R	L	S	V	L	E	N	V	L	I	G	A	L	G	S	T	P	F	W	R	T	C	F	S	W	F	T	G	E	Q	K	Q	R	A	L	Q	A	L	T	R	V	G	M	V	H	F	A	H	Q	R	V	S	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																								.	.	.	.	.	.	.	.	.	.
Alig confidence																					.																	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.
Template Conservation																					.																	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	W	L	R	A	Q	L	G	I	V	S	Q	E	P	I	L	F	D	C	.	S	I	A	E	N	I	A	Y	G	D	N	S	R	V	V	S	.	.	.	.	.	.	.	.	.	.	.	.	Y	E	E	I	V	R	A	A	K	E	A	N	I	H	Q	F	I	D	S	L	P	D	K	Y	N	T	R	V	G	D	K	G
Template Known Secondary structure					T	T	S						S	S					S	S	.	B						T				S	S					.	.	.	.	.	.	.	.	.	.	.	.												T						S	S	T	T	T	G	G	G		B		S	T	T	S
Template Predicted Secondary structure																					.																	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1103	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.		.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.													.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.
			152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	T	L	S	G	G	Q	Q	Q	R	V	A	I	A	R	A	L	M	Q	Q	A	K	V	I	L	A	D	E	P	I	A	S	L	D	P	E	S	A	R	I	V	M	D	T	L	R	D	I	N	Q	N	D	G	I	T	V	V	V	T	L	H	Q	V	D	Y	A	L	R	Y	C	E	R	I	V	A	L	R	Q	G	H
Query Conservation		.
Alig confidence		.																																																		.	.																	.
Template Conservation																																																				.	.																	.
Template Sequence		T	Q	L	S	G	G	Q	K	Q	R	I	A	I	A	R	A	L	V	R	Q	P	H	I	L	L	L	D	E	A	T	S	A	L	D	T	E	S	E	K	V	V	Q	E	A	L	D	K	A	R	E	.	.	G	R	T	C	I	V	I	A	H	R	L	S	T	I	Q	N	.	A	D	L	I	V	V	I	Q	N	G	K
Template Known Secondary structure			S	S																			S	S					S		S	S	S																	S	S	.	.	S	S							S		T	T	G	G	G	S	.		S							T	B
Template Predicted Secondary structure																																																				.	.																	.
Template SS confidence
		1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.			1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.		.	.	.	.	1240	.	.	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	F	Y	D	G	S	S	Q	Q	F	D	N	E	R	F	D	H	L	Y	R	S	I	N	R	V	E
Query Conservation
Alig confidence															.	.
Template Conservation															.	.
Template Sequence		V	K	E	H	G	T	H	Q	Q	L	L	A	Q	.	.	K	G	I	Y	F	S	M	V	S	V	Q
Template Known Secondary structure														S	.	.		S
Template Predicted Secondary structure															.	.
Template SS confidence
		1247	.	.	1250	.	.	.	.	.	.	.	.	.			1260	.	.	.	.	.	.	.	.	.	1270

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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