Job Description P16677 Confidence 98.50% Date Thu Jan 5 11:35:18 GMT 2012 Rank 89 Aligned Residues 212 % Identity 11% Template c3cmvG_ PDB info PDB header:recombination Chain: G: PDB Molecule:protein reca; PDBTitle: mechanism of homologous recombination from the reca-2 ssdna/dsdna structures Resolution 4.30 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.								.
Predicted Secondary structure																																																																										.	.	.	.	.	.	.
Query SS confidence																																																																										.	.	.	.	.	.	.
Query Sequence		D	L	N	I	H	H	G	E	M	V	A	L	L	G	P	S	G	S	G	K	S	T	L	L	R	H	L	S	G	L	I	T	G	D	K	S	V	G	S	H	I	E	L	L	G	R	T	V	Q	R	E	G	R	L	A	R	D	I	R	K	S	R	A	H	T	G	Y	I	F	Q	Q	F	.	.	.	.	.	.	.	N
Query Conservation																																																																										.	.	.	.	.	.	.
Alig confidence																																					.	.																																				.	.	.	.	.	.	.
Template Conservation																																					.	.
Template Sequence		A	G	G	L	P	M	G	R	I	V	E	I	Y	G	P	E	S	S	G	K	T	T	L	T	L	Q	V	I	A	A	A	Q	R	E	G	.	.	K	T	C	A	F	I	D	A	E	H	A	L	D	P	I	Y	A	R	K	L	G	V	D	I	D	N	L	L	C	S	Q	P	D	T	G	E	Q	A	L	E	I	C	D
Template Known Secondary structure		S	S	S			T	T	S							S	T	T	S	S														T	T	T	.	.								S	S												T			G	G	G							S
Template Predicted Secondary structure																																					.	.
Template SS confidence
		1053	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.			.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.																					.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Query Sequence		L	V	N	R	L	S	V	L	E	N	V	L	I	G	A	L	G	S	T	P	F	W	R	T	C	F	S	W	F	T	G	E	Q	K	Q	R	A	L	Q	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	T	R	V	G	M	V	H	F	.	A	H	Q	R	V	S	T	L	S	G
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Conservation
Template Sequence		A	L	A	R	S	G	A	V	D	V	I	V	V	D	S	V	A	A	L	T	P	K	A	E	I	E	G	L	A	A	R	M	M	S	Q	A	M	R	K	L	A	G	N	L	K	Q	S	N	T	L	L	I	F	I	N	Q	G	G	N	A	L	K	F	Y	A	S	V	R	L	D	I	R	R	I	G	A	V	K	E	G
Template Known Secondary structure					T	T	S	S									G	G	G											T	T																T	T	T											T	T						S														T
Template Predicted Secondary structure
Template SS confidence
		1131	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.			.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.							.
Predicted Secondary structure																		.	.																																																								.	.	.	.	.	.
Query SS confidence																		.	.																																																								.	.	.	.	.	.
Query Sequence		G	Q	Q	Q	R	V	A	I	A	R	A	L	M	Q	Q	A	.	.	K	V	I	L	A	D	E	P	I	A	S	L	D	P	E	S	A	R	I	V	M	D	T	L	R	D	I	N	Q	N	D	G	I	T	V	V	V	T	L	H	Q	V	D	Y	A	L	R	Y	C	E	R	I	V	A	L	.	.	.	.	.	.	R
Query Conservation																		.	.																																																								.	.	.	.	.	.
Alig confidence																		.	.											.														.	.	.	.	.													.														.	.	.	.	.	.
Template Conservation																														.														.	.	.	.	.													.
Template Sequence		E	N	V	V	G	S	E	T	R	V	K	V	V	K	N	K	I	A	A	P	F	K	Q	A	E	F	Q	I	.	L	Y	G	E	G	I	N	F	Y	G	E	L	V	.	.	.	.	.	D	L	G	V	K	E	K	L	I	E	K	A	.	G	A	W	Y	S	Y	K	G	E	K	I	G	Q	G	K	A	N	A	T	A
Template Known Secondary structure		T															S	S	S		T	T								.		T	T	T										.	.	.	.	.						T	T	S	S				.	T	T					T	T
Template Predicted Secondary structure																														.														.	.	.	.	.													.
Template SS confidence
		1235	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.		.	.	.	.	.	.	.	1270	.	.	.	.	.						.	.	.	.	1280	.	.	.	.	.	.	.		.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	H	V	F	Y	D	G	S	S	Q	Q	F	D	N	E	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	L	K	D	N	P	E	T	A	K	E	I	E	K	K	V	R
Template Known Secondary structure				T	T	S
Template Predicted Secondary structure
Template SS confidence
		1308	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions