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Job DescriptionP16677
Confidence98.50%DateThu Jan 5 11:35:18 GMT 2012
Rank89Aligned Residues212
% Identity11%Templatec3cmvG_
PDB info PDB header:recombinationChain: G: PDB Molecule:protein reca; PDBTitle: mechanism of homologous recombination from the reca-2 ssdna/dsdna structures
Resolution4.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   24.....30.........40.........50.........60.........70.........80.........90..... .
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Query Sequence  DLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSVGSHIELLGRTVQREGRLARDIRKSRAHTGYIFQQF. . . . . . . N
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Template Sequence  AGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG. . KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICD
Template Known Secondary structure  SSSTTS
STTSSTTT..


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   1053......1060.........1070.........1080....... ..1090.........1100.........1110.........1120.........1130
 
   97..100.........110.........120.........130...... ...140..... ....150.....
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Query Sequence  LVNRLSVLENVLIGALGSTPFWRTCFSWFTGEQKQRALQA. . . . . . . . . . . . . . . . . . . . LTRVGMVHF. AHQRVSTLSG
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Template Sequence  ALARSGAVDVIVVDSVAALTPKAEIEGLAARMMSQAMRKLAGNLKQSNTLLIFINQGGNALKFYASVRLDIRRIGAVKEG
Template Known Secondary structure  TTSS


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   1131........1140.........1150.........1160.........1170.........1180.........1190.........1200.........1210
 
   156...160.........170. ........180.........190.........200.........210.........220...... .
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Query Sequence  GQQQRVAIARALMQQA. . KVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVAL. . . . . . R
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Template Sequence  ENVVGSETRVKVVKNKIAAPFKQAEFQI. LYGEGINFYGELV. . . . . DLGVKEKLIEKA. GAWYSYKGEKIGQGKANATA
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   1235....1240.........1250.........1260.. .......1270..... ....1280....... ..1290.........1300.......
 
   228.230.........240....
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Query Sequence  QGHVFYDGSSQQFDNER
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Template Sequence  WLKDNPETAKEIEKKVR
Template Known Secondary structure  TTS
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   1308.1310.........1320....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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