Return to main results Retrieve Phyre Job Id

Job DescriptionP16677
Confidence98.82%DateThu Jan 5 11:35:18 GMT 2012
Rank82Aligned Residues219
% Identity24%Templatec3auyB_
PDB info PDB header:recombinationChain: B: PDB Molecule:dna double-strand break repair rad50 atpase; PDBTitle: crystal structure of rad50 bound to adp
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  MQTIIRVEKLAK. TFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLI. . . . . . . . . . . TGDKSVGSHIELLG
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Template Sequence  MS. . MILKEIRMNNFKS. . . HVNSRIKFEKG. IVAIIGENGSGKSSIFEAVFFALFGAGSFNYDTIITKGKKSVYVELDF
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S.
TTSS
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GGGTB
TT
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   1. .......10..... ....20...... ...30.........40.........50.........60.........70....
 
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Query Sequence  RTVQREGRLARDIRKSRAHTGYIFQQFNLVNRLSVLE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  EVNGNNYKIIREYDSGRGGAKLYKNGKPYATTISAVNKAVNEILGVDRNMFLNSIYIKQGEIAKFLSLKPSEKLETVAKL
Template Known Secondary structure  TTTTTT
S
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TTS
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   76...80.........90.........100.........110.........120.........130.........140.........150.....
 
   106...110.........120.........130......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . NVLIGALGSTPFWRTCFSWFTGEQKQRALQA
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Template Sequence  LGIDEFEKCYQKMGEIVKEYEKRLERIEGELNYNLEKEKEKLTKFVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEA
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TTTTTTTTT
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   156...160.........170.........180.........190.........200.........210.........220.........230.....
 
   137..140........ .150.........160........ .170.........180.........190...
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Query Sequence  LTRVGMVHFAHQ. . . . . . . . . . . . . . . . RVSTLSGGQQQRVAIARALM. . . . . . . QQAKVILADEPIASLDPESARIVMD
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Template Sequence  FSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAE
Template Known Secondary structure  TT
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STTTTTGGGS
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SSTTTT

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   883......890.........900.........910.........920.........930.........940.........950.........960..
 
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Query Sequence  TLRDINQNDGITVVVTLHQVDYALRYCERIVALRQ
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Template Sequence  IFRK. . VKSIPQMIIITHHRE. LEDVADVIINVKK
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GG.GGGG
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   963... ...970.........980. ........990....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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