Job Description P16677 Confidence 95.66% Date Thu Jan 5 11:35:18 GMT 2012 Rank 420 Aligned Residues 131 % Identity 17% Template c2j289_ PDB info PDB header:ribosome Chain: 9: PDB Molecule:signal recognition particle 54; PDBTitle: model of e. coli srp bound to 70s rncs Resolution 8.0 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure
Query SS confidence
Query Sequence		H	A	V	D	L	N	I	H	H	G	E	M	V	A	L	L	G	P	S	G	S	G	K	S	T	L	L	R	H	L	S	G	L	I	T	G	D	K	S	V	G	S	H	I	E	L	L	G	R	T	V	Q	R	E	G	R	L	A	R	D	I	R	K	S	R	A	H	T	G	Y	I	F	Q	Q	F	N	L	V	N	R
Query Conservation
Alig confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.
Template Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.
Template Sequence		Q	T	L	N	L	A	A	Q	P	P	A	V	V	L	M	A	G	L	Q	G	A	G	K	T	T	S	V	G	K	L	G	K	F	L	R	E	K	H	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	K	V	L	V	V	S	A	D	V	Y	.	.	.	.
Template Known Secondary structure						S		S	S	S	S								S	S	S	S	S	S	T	T	T										T	S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					B						S	.	.	.	.
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.																											130	.	.	.	.	.	.	.	.	.	140
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	V	L	E	N	V	L	I	G	A	L	G	S	T	P	F	W	R	T	C	F	S	W	F	T	G	E	Q	K	Q	R	A	L	Q	A	L	T	R	V	G	M	V	H	F	A	H	Q	R	V	S	T	L	S	G	G	Q	Q	Q	R	V	A	I	A	R	A	L	M	Q	Q	A	K	V	I	L	A	D	E	P	I
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	P	A	A	I	K	Q	L	E	T	L	A	E	Q	V	G	V	D	F	F	P	S	D	V	G	Q	K	P	V	.	.	D	I	V	N	A	A	L	K	E	A	K	L	K	F	Y	D	V	L	L	V	D	T	A	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S		S											T	T							S	S				T	T	.	.													T	T		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.
Template SS confidence
																											141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.			170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
			181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	A	S	L	D	P	E	S	A	R	I	V	M	D	T	L	R	D	I	N	Q	N	D	G	I	T	V	V	V	T	L
Query Conservation		.
Alig confidence		.																			.	.
Template Conservation																					.	.
Template Sequence		R	L	H	V	D	E	A	M	M	D	E	I	K	Q	V	H	A	S	I	.	.	N	P	V	E	T	L	F	V	V	D
Template Known Secondary structure				S	S																.	.			S
Template Predicted Secondary structure																					.	.
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.			.	.	.	.	.	.	.	220	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions