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Job DescriptionP16677
Confidence97.35%DateThu Jan 5 11:35:18 GMT 2012
Rank133Aligned Residues156
% Identity15%Templatec2dflA_
PDB info PDB header:recombinationChain: A: PDB Molecule:dna repair and recombination protein rada; PDBTitle: crystal structure of left-handed rada filament
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40.........50.........60.. .......70.........80.........90.........100..
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Query Sequence  IHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSVGS. . . . HIELLGRTVQREGRLARDIRKSRAHTGYIFQQFNLVNRLS
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Template Sequence  IETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAIN
Template Known Secondary structure  B
TTSSTTSSTTSSS
GGGTS
S
SSS


T

T

S
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   104.....110.........120.........130.........140.........150.........160.........170.........180...
 
   103......110.........120.........130.........140.........150.........160.........170.......
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Query Sequence  VLENVLIGALGSTPFWRTCFSWFTGEQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILAD. . . . .
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Template Sequence  TDHQI. . . . . . . . . . . . . . . . . . . AIVDDLQELVSKD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . PSIKLIVVDSVTSH
Template Known Secondary structure  ...................T
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TT
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   184.... .190.........200. ........210.....
 
   178.180.........190.........200.........210.........220.........230
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Query Sequence  . . . . . . . EPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGH
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Template Sequence  FRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMHTLYHVPGIRIQLKKSR
Template Known Secondary structure  S
TTTSTTTTT






SS
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   216...220.........230.........240.........250.........260.........270.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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