 |
Job Description | P63264 | Confidence | 28.29% | Date | Thu Jan 5 12:08:02 GMT 2012 |
Rank | 405 | Aligned Residues | 77 |
% Identity | 14% | Template | c3kp3B_ |
PDB info |
PDB header:transcription regulator/antibiotic | Chain: B: PDB Molecule:transcriptional regulator tcar; |
PDBTitle: staphylococcus epidermidis in complex with ampicillin
|
Resolution | 3.20 Å |
|
 |
  |   |
8 | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | |
|
|
|
. | . | . | . | . | . | 30 | . | . | . | . | |
|
|
|
. | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  | . | . | . | . |  |  |  |  |  |  |
|
|
|  |  | . | . | . | . |
|
|
|
|
|
|
|
|
|  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
F | T | I | T | E | F | C | L | H | T | G | I | S | E | E | E | . |
. |
. |
. |
L | N | E | I | V | G | L | G | V | V | E | . |
. |
. |
. |
P | R | E | I | Q | E | T | T | W | V | F | D | D | H | A | A | I | V | V | Q | R | A | V | R | L | R | H | E | L | A | L | D | W | P | G | I | A | V | A | L | T | L | M | D | D |
Query Conservation |   |
  |
|
|   |
|   |
|   |   |   |
|
|
|   |   |   | . | . | . | . |
|
|   |
|   |   |   |
|
|
|   | . | . | . | . |
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|
|   |   |
|   |
|
|   |
|
|
|
|   |   |
|   |   |
|   |   |
|
|   |
|   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |
|
|
|   |   |   |   |
|   |   |   |   |
|
|   |   |
|   |   |
|   |   |   |
|   |
|   |
|   |   |   |
|   |
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . |   |
|   |   |
|
|
|   |   |   |   |   |   |
|   |   |
Template Sequence |   |
L | T | V | G | Q | I | T | E | K | Q | G | V | N | K | A | A | V | S | R | R | V | K | K | L | L | N | A | E | L | V | K | L | E | K | I | I | K | L | S | N | K | G | K | K | Y | I | K | E | R | K | A | I | M | S | H | I | A | S | D | M | T | S | . |
. |
D | F | D | S | K | E | I | E | K | V | R | Q | V | L | E | I |
Template Known Secondary structure |   |
B |
|  |  |  |  |  |  |  |  | T | S |
|  |  |  |  |  |  |  |  |  |  |  |  | T | T | T | S |  |  |
|
|
|
| B |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T | . | . | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
52 | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | |
|
. | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . |
  |
  |   |
80 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
Query Sequence |   |
I | A | H | L | K | Q | E |
Query Conservation |   |
  |   |   |
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |
|   |   |
Template Sequence |   |
I | D | Y | R | I | Q | S |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
  |   |
140 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|