Job Description P00561 Confidence 96.67% Date Thu Jan 5 10:56:43 GMT 2012 Rank 172 Aligned Residues 121 % Identity 17% Template c3k8zD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:nad-specific glutamate dehydrogenase; PDBTitle: crystal structure of gudb1 a decryptified secondary glutamate2 dehydrogenase from b. subtilis Resolution 2.40 Å

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		448	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	T	G	V	R	V	T	H	Q	M	L	F	N	T	D	Q	V	I	E	V	F	V	I	G	V	G	G	V	G	G	A	L	L	E	Q	L	K	R	Q	Q	S	W	L	K	N	K	H	I	D	L	R	V	C	G	V	A	N	S	K	A	L	L	T	N	V	H	G	L	N	L	E	N	W	Q	E	E	L	A	Q
Query Conservation
Alig confidence																																										.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.
Template Sequence		V	T	I	C	I	K	E	A	A	K	K	R	G	I	D	I	K	G	A	R	V	V	V	Q	G	F	G	N	A	G	S	Y	L	A	K	F	M	H	D	A	.	.	.	.	.	.	.	.	.	G	A	K	V	V	G	I	S	D	A	Y	G	G	L	Y	D	P	E	G	L	D	I	.	.	.	.	.	.	.	.	.
Template Known Secondary structure													T	T			G	G	G									S	S												T	.	.	.	.	.	.	.	.	.	T									S	S						T	T					.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.										.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
		528	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	E	P	F	N	L	G	R	L	I	R	L	V	K	E	Y	H	L	L	N	P	V	I	V	D	C	T	S	S	Q	A	V	A	D	Q	Y	A	D	F	L	R	E	G	F	H	V	V	T	P	N	K	K	A	N	T	S	S	M	D	Y	Y	H	Q	L	R	Y	A	A	E	K	S	R	R	K	F	L	Y	D	T
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	C	D	I	L	V	P	A	A	I	E	N	Q	I	T	E	E	N	A	H	N	I	R	A	K	I	V	V	E	A	A	N	G	P	T	T	L	.	.	.	.	.	.	.	E	G	T	K	I	L	S	D	R	D	I	L	L	V	P	D	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									S		S		S	B		T	T	T	G	G	G				S						S	S	S		B			.	.	.	.	.	.	.									T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.
Template SS confidence
																					265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.								.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		608	.	610	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	G	A	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	A	S	A	G
Template Known Secondary structure				T	T
Template Predicted Secondary structure
Template SS confidence
		348	.	350	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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