Job Description P00561 Confidence 99.96% Date Thu Jan 5 10:56:43 GMT 2012 Rank 16 Aligned Residues 220 % Identity 17% Template c3k4yB_ PDB info PDB header:transferase Chain: B: PDB Molecule:isopentenyl phosphate kinase; PDBTitle: crystal structure of isopentenyl phosphate kinase from m. jannaschii2 in complex with ipp Resolution 2.54 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.																.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	R	V	L	K	F	G	G	T	S	V	A	N	A	E	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	L	R	V	A	D	I	L	E	S	N	A	R	Q	G	Q	V	A	T	V	L	S	A	P	A	K	I	T	N	H	L	V	A	M	I	E	K	T	I	S	G	Q	D	A	L	P	N	I	S
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.																											.	.	.	.	.	.
Template Conservation																																																	.																											.	.	.	.	.	.
Template Sequence		L	T	I	L	K	L	G	G	S	I	L	S	D	K	N	V	P	Y	S	I	K	W	D	N	L	E	R	I	A	M	E	I	K	N	A	L	D	Y	Y	K	N	Q	N	K	E	I	K	.	L	I	L	V	H	G	G	G	A	F	G	H	P	V	A	K	K	Y	L	K	I	E	D	G	K	K	.	.	.	.	.	.
Template Known Secondary structure									T	T	T	S	S		T	T	S	T	T																								T	T					.																	T	T				S	S	S	S		.	.	.	.	.	.
Template Predicted Secondary structure																																																	.																											.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	E	R	I	F	A	E	L	L	T	G	L	A	A	A	Q	P	G	F	P	L	A	Q	L	K	T	F	V	D	Q	E	F	A	Q	I	K	H	V	L	H	G	I	S	L	L	G	Q	C	P	D	S	I	N	A	A	L	I	C	R	G	E	K	M	S	I	A	I	M	A	G	V	L	E	A	R	G	H	N	V
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	F	I	N	M	E	K	G	F	W	E	I	Q	R	A	M	R	R	F	N	N	I	I	I	D	T	L	Q	S	Y	D	I	P	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		146	.	.	.	150	.	.	.		.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		T	V	I	D	P	V	E	K	.	L	L	A	V	G	H	Y	L	E	S	T	V	D	I	A	E	S	T	R	R	I	A	A	S	R	I	P	A	D	H	M	V	L	M	A	G	F	T	A	G	N	E	K	G	E	L	V	V	L	G	R	N	G	S	D	Y	S	A	A	V	L	A	A	C	L	R	A	D	C	C	E
Query Conservation										.
Alig confidence										.													.	.	.	.	.	.	.	.	.																													.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.																													.	.	.
Template Sequence		V	S	I	Q	P	S	S	F	V	V	F	G	D	K	L	I	F	D	T	S	A	.	.	.	.	.	.	.	.	.	I	K	E	M	L	K	R	N	L	V	P	V	I	H	G	D	I	V	I	D	D	K	N	G	Y	R	I	I	.	.	.	S	G	D	D	I	V	P	Y	L	A	N	E	L	K	A	D	L	I	L
Template Known Secondary structure						G	G	G	T					S	S								.	.	.	.	.	.	.	.	.							T	T													T	T	T						.	.	.														T		S
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.																													.	.	.
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.										130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.				.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.										.	290	.	.	.	.	.
Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.	.	.	.	.
Query Sequence		I	W	T	D	V	D	G	V	Y	T	C	D	P	R	Q	V	P	D	A	R	L	L	K	S	M	S	Y	Q	E	A	M	E	L	S	Y	F	G	A	K	V	L	H	P	R	T	I	T	P	I	A	Q	F	Q	I	P	C	L	I	K	N	T	G	N	P	.	.	.	.	.	.	.	.	.	Q	A	P	G	T	L	I
Query Conservation																																																																		.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.																			.	.	.																								.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.																			.	.	.
Template Sequence		Y	A	T	D	V	D	G	V	L	I	D	N	K	.	.	.	.	.	.	.	P	I	K	R	I	D	K	N	N	I	Y	K	I	L	N	Y	L	G	.	.	.	M	K	Y	K	I	E	M	I	R	K	N	K	C	R	G	F	V	F	N	G	N	K	A	N	N	I	Y	K	A	L	L	G	E	V	E	G	T	E	I
Template Known Secondary structure					S	S	S	S	S			T	T		.	.	.	.	.	.	.			S				S	S	T	T									.	.	.								T	T	T	T	T								S	S	S	T	T							T	T				S
Template Predicted Secondary structure															.	.	.	.	.	.	.																			.	.	.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.								190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.				.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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