Job Description P00561 Confidence 100.00% Date Thu Jan 5 10:56:43 GMT 2012 Rank 9 Aligned Residues 315 % Identity 23% Template c3c8mA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:homoserine dehydrogenase; PDBTitle: crystal structure of homoserine dehydrogenase from thermoplasma2 volcanium Resolution 1.90 Å

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		463	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Q	V	I	E	V	F	V	I	G	V	G	G	V	G	G	A	L	L	E	Q	L	K	R	Q	Q	S	W	L	K	N	K	H	I	D	L	R	V	C	G	V	A	N	S	K	A	L	L	T	N	V	H	G	L	N	L	E	N	W	Q	E	E	L	A	Q	A	K	E	P	F	N	L	G	R	L	I	R	L	V	K
Query Conservation
Alig confidence																																.																				.
Template Conservation																																.																				.
Template Sequence		X	K	T	I	N	L	S	I	F	G	L	G	N	V	G	L	N	L	L	R	I	I	R	S	F	N	E	E	N	R	.	L	G	L	K	F	N	V	V	F	V	A	D	S	L	H	S	Y	Y	N	.	E	R	I	D	I	G	K	V	I	S	Y	K	E	K	G	S	L	D	S	L	E	Y	E	S	I	S	A	S	E
Template Known Secondary structure													S																		S	.	S	S											S	S						.	T	T												T	T		G	G	G			S
Template Predicted Secondary structure																																.																				.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		543	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.					.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.
Query SS confidence																		.	.	.	.
Query Sequence		E	Y	H	L	L	N	P	V	I	V	D	C	T	S	S	Q	.	.	.	.	A	V	A	D	Q	Y	A	D	F	L	R	E	G	F	H	V	V	T	P	N	K	K	A	N	T	S	S	M	D	Y	Y	H	Q	L	R	Y	A	A	E	K	S	R	R	K	F	L	Y	D	T	N	V	G	A	G	L	P	V	I	E	N
Query Conservation																		.	.	.	.
Alig confidence																		.	.	.	.																										.	.	.
Template Conservation																																															.	.	.
Template Sequence		A	L	A	R	D	F	D	I	V	V	D	A	T	P	A	S	A	D	G	K	K	E	L	A	F	Y	K	E	T	F	E	N	G	K	D	V	V	T	A	N	K	S	G	L	A	.	.	.	N	F	W	P	E	I	X	E	Y	A	R	S	N	N	R	R	I	R	Y	E	A	T	V	A	G	G	V	P	L	F	S	F
Template Known Secondary structure					S	S		S						S				S	S	S													T	T													.	.	.														T						G	G	G	S	S	T	T	S
Template Predicted Secondary structure																																															.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.				.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		619	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690		.	.	.	.	.	.	.
Predicted Secondary structure																																																																										.
Query SS confidence																																																																										.
Query Sequence		L	Q	N	L	L	N	A	G	D	E	L	M	K	F	S	G	I	L	S	G	S	L	S	Y	I	F	G	K	L	D	E	G	M	S	F	S	E	A	T	T	L	A	R	E	M	G	Y	T	E	P	D	P	R	D	D	L	S	G	M	D	V	A	R	K	L	L	I	L	A	R	E	T	.	G	R	E	L	E	L	A
Query Conservation																																																																										.
Alig confidence							.																																																																			.
Template Conservation							.
Template Sequence		I	D	Y	S	V	.	L	P	S	R	I	K	K	F	R	G	I	V	S	L	T	I	N	Y	F	I	R	E	L	A	N	K	R	E	F	D	D	V	L	S	E	A	T	K	L	G	I	V	E	K	N	Y	K	D	D	L	T	G	L	D	A	A	R	K	S	V	I	L	C	N	H	L	Y	G	S	S	Y	R	L	S
Template Known Secondary structure						S	.	T	T																							T	T														T	S	S		S	S						T	T																					G	G
Template Predicted Secondary structure							.
Template SS confidence
		156	.	.	.	160		.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		698	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750				.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.
Predicted Secondary structure																																																							.	.	.
Query SS confidence																																																							.	.	.
Query Sequence		D	I	E	I	E	P	V	L	P	A	E	F	N	A	E	G	D	V	A	A	F	M	A	N	L	S	Q	L	D	D	L	F	A	A	R	V	A	K	A	R	D	E	G	K	V	L	R	Y	V	G	N	I	D	.	.	.	E	D	G	V	C	R	V	K	I	A	E	V	D	G	N	D	P	L	F	K	V	K	N	G
Query Conservation																																																							.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	V	F	Y	E	G	I	L	Q	D	R	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	G	K	N	E	R	L	V	T	E	T	G	I	V	N	G	K	P	S	A	E	S	R	I	K	S	L	D	S	N	D	Y	L	L	T	L	G	K	G
Template Known Secondary structure		G	S											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T											T	T													T	T		G	G	G	G	S		T	T
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.																														.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
		775	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	N	A	L	A	F	Y	S	H	Y	Y	Q	P	L	P	L	V	L	R	G	Y	G	A	G	N	D	V	T	A	A	G	V	F	A	D	L	L	R	T	L
Query Conservation
Alig confidence															.	.
Template Conservation															.	.
Template Sequence		S	L	G	Y	Q	L	Q	T	D	T	N	G	T	.	.	L	N	V	S	D	L	Y	D	G	P	Y	E	T	A	G	A	V	X	N	D	L	V	I	L	S
Template Known Secondary structure										S	S	S			.	.						S	S
Template Predicted Secondary structure															.	.
Template SS confidence
		287	.	.	290	.	.	.	.	.	.	.	.	.			300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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