Job Description P00561 Confidence 100.00% Date Thu Jan 5 10:56:43 GMT 2012 Rank 11 Aligned Residues 305 % Identity 30% Template c2ejwB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:homoserine dehydrogenase; PDBTitle: homoserine dehydrogenase from thermus thermophilus hb8 Resolution 1.70 Å

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		464	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	V	I	E	V	F	V	I	G	V	G	G	V	G	G	A	L	L	E	Q	L	K	R	Q	Q	S	W	L	K	N	K	H	I	D	L	R	V	C	G	V	A	N	S	K	A	L	L	T	N	V	H	G	L	N	L	E	N	W	Q	E	E	L	A	Q	A	K	E	P	F	N	L	G	R	L	I	R	L	V	K	E
Query Conservation
Alig confidence																																																.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	A	L	K	I	A	L	L	G	G	G	T	V	G	S	A	F	Y	N	L	V	L	E	R	A	E	E	L	S	A	F	G	V	V	P	R	F	L	G	V	L	V	R	D	P	R	.	.	K	P	R	A	I	P	Q	E	L	L	R	A	E	P	F	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure												S													T						T	T	T											S		T	T	.	.	S			S	S		G	G	G			S	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.			.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.
		544	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.		560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		Y	H	L	L	N	P	V	I	V	D	C	T	S	S	Q	A	.	V	A	D	Q	Y	A	D	F	L	R	E	G	F	H	V	V	T	P	N	K	K	A	N	T	S	S	M	D	Y	Y	H	Q	L	R	Y	A	A	E	K	S	R	R	K	F	L	Y	D	T	N	V	G	A	G	L	P	V	I	E	N	L	Q	N	L
Query Conservation																		.
Alig confidence		.																.																									.	.	.															.	.
Template Conservation		.																																									.	.	.															.	.
Template Sequence		.	L	L	E	A	D	L	V	V	E	A	M	G	G	V	E	A	P	L	R	L	V	L	P	A	L	E	A	G	I	P	L	I	T	A	N	K	A	L	L	A	.	.	.	E	A	W	E	S	L	R	P	F	A	E	E	G	L	.	.	I	Y	H	E	A	S	V	M	A	G	T	P	A	L	S	F	L	E	T	L
Template Known Secondary structure		.		T	T		S									S													T	T													.	.	.		S										T	T		.	.				G	G	G	T	T	T	T	S	S	S
Template Predicted Secondary structure		.																																									.	.	.															.	.
Template SS confidence
			64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.				.	.	.	.	.	.	110	.	.	.	.	.	.	.			.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		623	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690		.	.	.	.	.	.	.	.	.	700	.
Predicted Secondary structure																																																																						.
Query SS confidence																																																																						.
Query Sequence		L	N	A	G	D	E	L	M	K	F	S	G	I	L	S	G	S	L	S	Y	I	F	G	K	L	D	E	G	M	S	F	S	E	A	T	T	L	A	R	E	M	G	Y	T	E	P	D	P	R	D	D	L	S	G	M	D	V	A	R	K	L	L	I	L	A	R	E	T	.	G	R	E	L	E	L	A	D	I	E	I
Query Conservation																																																																						.
Alig confidence		.	.																																																																			.
Template Conservation		.	.
Template Sequence		.	.	R	G	S	E	L	L	E	L	H	G	I	L	N	G	T	T	L	Y	I	L	Q	E	M	E	K	G	R	T	Y	A	E	A	L	L	E	A	Q	R	L	G	Y	A	E	A	D	P	T	L	D	V	E	G	I	D	A	A	H	K	L	T	L	L	A	R	L	L	V	D	P	G	F	P	F	A	E	V	E	A
Template Known Secondary structure		.	.	T	T	S																						T	T														T	S	S		S							T	T															T		T	T			G	G	G
Template Predicted Secondary structure		.	.
Template SS confidence
				138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		702	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.				.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.
Query SS confidence																																																						.	.	.
Query Sequence		E	P	V	L	P	A	E	F	N	A	E	G	D	V	A	A	F	M	A	N	L	S	Q	L	D	D	L	F	A	A	R	V	A	K	A	R	D	E	G	K	V	L	R	Y	V	G	N	I	D	E	D	G	.	.	.	V	C	R	V	K	I	A	E	V	D	G	N	D	P	L	F	K	V	K	N	G	E	N	A	L
Query Conservation																																																						.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.																					.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																				.	.
Template Sequence		Q	G	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	R	L	T	P	E	V	L	Q	K	A	E	A	R	G	E	R	V	R	L	V	A	S	L	F	G	E	G	G	R	W	R	A	A	V	A	P	R	R	L	P	Q	D	H	P	L	A	R	A	R	G	.	.	N	A	L
Template Known Secondary structure				S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T												T	T													T	T													T	T	S						S	S	.	.
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																				.	.
Template SS confidence
		216	.	.																						.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.			270	.	.
		779	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	Y	S	H	Y	Y	Q	P	L	P	L	V	L	R	G	Y	G	A	G	N	D	V	T	A	A	G	V	F	A	D	L	L	R	T	L	S	W	K	L	G
Query Conservation
Alig confidence										.	.
Template Conservation										.	.
Template Sequence		W	V	R	A	R	P	L	G	.	.	E	A	F	V	T	G	P	G	A	G	G	G	A	T	A	S	G	L	F	A	D	L	L	R	F	L	S	G	A	P	G
Template Known Secondary structure							T	T		.	.																											T	T
Template Predicted Secondary structure										.	.
Template SS confidence
		273	.	.	.	.	.	.	280			.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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