Job Description P00561 Confidence 97.02% Date Thu Jan 5 10:56:43 GMT 2012 Rank 157 Aligned Residues 143 % Identity 13% Template c1u8sB_ PDB info PDB header:transcription Chain: B: PDB Molecule:glycine cleavage system transcriptional PDBTitle: crystal structure of putative glycine cleavage system2 transcriptional repressor Resolution 2.45 Å

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		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	N	N	M	A	M	F	S	V	S	G	P	G	M	K	G	M	V	G	M	A	A	R	V	F	A	A	M	S	R	A	R	I	S	V	V	L	I	T	Q	S	S	S	E	Y	S	I	S	F	C	V	P	Q	S	D	C	V	R	A	E	R	A	M	Q	E	E	F	Y	L	E	L	K	E	G	L	L	E	P	L
Query Conservation
Alig confidence															.	.	.
Template Conservation															.	.	.
Template Sequence		S	L	T	Q	H	L	V	I	T	A	V	G	T	.	.	.	D	R	P	G	I	C	N	E	V	V	R	L	V	T	Q	A	G	C	N	I	I	D	S	R	I	A	M	F	G	K	E	F	T	L	L	M	L	I	S	G	S	P	S	N	I	T	R	V	E	T	T	L	P	L	L	G	Q	Q	H	D	L	I	T	M
Template Known Secondary structure															.	.	.			T	T											T	T	T												T	T																												T	T	T
Template Predicted Secondary structure															.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.				.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		391	.	.	.	.										.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.				.	.	.	.	.	.	.	.	440	.	.	.							.	.	.	.	.	.	450	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.																																					.	.	.													.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.																																					.	.	.													.	.	.	.	.	.
Query Sequence		A	V	T	E	R	.	.	.	.	.	.	.	.	.	L	A	I	I	S	V	V	G	D	G	M	R	T	L	R	G	I	S	A	K	F	F	A	A	L	A	R	A	N	I	N	I	V	A	I	A	.	.	.	Q	G	S	S	E	R	S	I	S	V	V	V	.	.	.	.	.	.	N	N	D	D	A	T	T	G	V
Query Conservation							.	.	.	.	.	.	.	.	.																																					.	.	.													.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.									.	.	.																										.	.	.													.	.	.	.	.	.
Template Conservation																								.	.	.
Template Sequence		M	K	R	T	S	P	H	D	H	Q	T	H	A	Y	T	V	E	V	Y	V	E	S	.	.	.	D	D	K	L	G	L	T	E	K	F	T	Q	F	F	A	Q	R	Q	I	G	M	A	S	L	S	A	Q	T	I	S	K	N	Q	F	H	I	A	I	S	A	R	V	D	S	G	C	N	L	M	Q	L	Q	E	E	F
Template Known Secondary structure														S										.	.	.	S			T	T	T											T	T																										T	T	S
Template Predicted Secondary structure																								.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100				.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		453	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	T	H	Q	M	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	A	L	C	T	A	L
Template Known Secondary structure								T
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions