 |
Job Description | P33020 | Confidence | 54.73% | Date | Thu Jan 5 11:50:55 GMT 2012 |
Rank | 454 | Aligned Residues | 54 |
% Identity | 20% | Template | d1b9ma1 |
SCOP info | DNA/RNA-binding 3-helical bundle
| "Winged helix" DNA-binding domain
| N-terminal domain of molybdate-dependent transcriptional regulator ModE
|
Resolution | 1.75 |
|
 |
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | |
. | . | . | . | |
|
|
|
. | 50 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |
| . | . | . | . |
|
|  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
Query Sequence |   |
M | N | N | R | E | K | E | I | L | A | I | L | R | R | N | P | L | I | Q | Q | N | E | I | A | D | M | L | Q | I | S | R | S | R | V | A | A | H | I | M | D | L | M | R | K | . |
G | R | I | K | . |
. |
. |
. |
G | K | G | Y | I | L | T | E |
Query Conservation |   |
  |   |   |
|
|   |   |
|   |   |   |
|   |   |   |
|   |
|   |   |   |   |
|
|   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |
|   |   |   | . |
|   |   |   | . | . | . | . |
|   |   |
|
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
|   |   |
|   |
|
|   |   |   |
|
|   | . | . |   |   |
|
|   |   |
|   |   |
|   |   |   |
|
|   |   |
|   |   |
|
|   |   |
|
|   |   |
|
|   |
|   |   |   |
|   |   |
|
|   |
Template Sequence |   |
A | D | P | R | R | I | S | L | L | K | H | I | A | L | S | G | S | I | . |
. |
S | Q | G | A | K | D | A | G | I | S | Y | K | S | A | W | D | A | I | N | E | X | N | Q | L | S | E | H | I | L | V | E | R | A | T | G | G | A | V | L | T | R |
Template Known Secondary structure |   |
 |
|  |  |  |  |  |  |  |  |  |  |  |  |  | S | S |  | . | . |  |  |  |  |  |  |  | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | S |
|
|  |  |  |
|
|
|
|  |  |  |
|  |
Template Predicted Secondary structure |   |
 |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  | . | . |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
17 | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | |
|
. | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|