Job Description P33020 Confidence 100.00% Date Thu Jan 5 11:50:55 GMT 2012 Rank 26 Aligned Residues 277 % Identity 18% Template c3i3yB_ PDB info PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase; PDBTitle: crystal structure of ribokinase in complex with d-ribose from2 klebsiella pneumoniae Resolution 2.15 Å

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		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.		.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence		Y	C	V	V	V	G	T	I	N	M	D	I	R	G	M	A	D	I	R	Y	P	Q	S	A	S	H	.	P	G	T	I	H	C	S	A	G	G	V	G	R	N	I	A	H	N	L	A	L	L	G	R	D	V	H	L	L	S	V	I	G	D	D	F	Y	G	E	M	L	L	E	E	T	R	R	A	G	V	N	V	S
Query Conservation																												.
Alig confidence																												.
Template Conservation
Template Sequence		R	V	Y	V	T	G	N	I	T	V	D	E	T	W	S	I	P	D	I	P	K	K	G	A	S	I	H	G	V	K	V	S	Q	D	I	G	G	K	G	A	N	Q	A	I	I	L	S	R	C	G	I	E	T	R	L	I	A	A	T	G	N	D	S	N	G	A	W	I	R	Q	Q	I	K	N	E	P	L	X	L	L
Template Known Secondary structure																		S	S				T	T																										T	T											S	S											T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	C	V	R	L	H	G	Q	S	T	S	T	Y	L	A	I	A	N	R	D	D	Q	T	V	L	A	I	N	D	T	H	L	L	E	Q	L	T	P	Q	L	L	N	G	S	R	D	L	L	R	H	A	G	V	V	L	A	D	C	N	L	T	A	E	A	L	E	W	V	F	T	L	A	D	E	I	P	V	F	V	D
Query Conservation
Alig confidence				.																							.	.	.	.
Template Conservation				.																							.	.	.	.
Template Sequence		P	D	.	G	H	F	N	Q	H	S	D	T	S	I	I	L	A	D	G	N	A	I	I	T	T	.	.	.	.	T	A	A	A	D	T	F	S	L	D	E	X	I	P	H	X	A	D	A	V	A	G	D	I	L	L	Q	Q	G	N	F	S	L	D	K	T	R	A	L	F	Q	Y	A	R	S	R	G	X	T	T	V
Template Known Secondary structure		S	S	.	S			S	S																		.	.	.	.		T	T	T	T	T							G	G	G	G	T	T			T	T							S		S															T	T
Template Predicted Secondary structure				.																							.	.	.	.
Template SS confidence
		82	.		.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.					.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	S	E	F	K	A	G	K	I	K	H	W	L	A	H	I	H	T	L	K	P	T	L	P	E	L	E	I	L	W	G	Q	A	I	T	S	D	A	D	R	N	T	A	V	N	A	L	H	Q	Q	G	V	Q	Q	L	F	V	Y	L	P	D	E	S	V	Y	C	S	E	K	D	G	E	Q	F	L	L	T	A	P
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Sequence		F	N	P	S	P	V	N	P	D	F	C	H	L	W	P	L	I	D	I	A	V	V	N	E	S	E	A	E	L	L	Q	P	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	V	K	T	L	V	I	T	Q	G	A	A	G	A	W	L	V	Q	.	E	G	Q	R	Q	F	C	P	A	V
Template Known Secondary structure						S			G	G	G	G	G		G	G	G		S																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S		S							T	T	S						S	.	S	S
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.																			.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210		.	.	.	.	.	.	.	.	.	220
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.			.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.
Query SS confidence																													.	.
Query Sequence		A	H	T	T	V	D	S	F	G	A	D	D	G	F	M	A	G	L	V	Y	S	F	L	E	G	Y	S	.	.	F	R	D	S	A	R	F	A	V	A	C	A	A	I	S	R	A	S	G	S	L	N	N	P	T	L	S	A	D	N	A	L	S	L	V
Query Conservation																													.	.
Alig confidence																													.	.
Template Conservation
Template Sequence		P	A	E	A	L	D	T	T	G	A	G	D	T	F	L	A	V	X	L	A	S	A	L	L	R	G	V	A	P	D	A	L	A	L	A	H	A	S	R	A	A	A	I	T	V	S	R	R	G	T	L	S	A	F	P	G	S	R	E	L	A	A	L	L
Template Known Secondary structure						S			T	T																T	T	S		S																T	T	S		S	S	G	G	G	S										T
Template Predicted Secondary structure
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions