 |
Job Description | P33020 | Confidence | 95.68% | Date | Thu Jan 5 11:50:55 GMT 2012 |
Rank | 201 | Aligned Residues | 58 |
% Identity | 22% | Template | c2hwvA_ |
PDB info |
PDB header:transcription | Chain: A: PDB Molecule:dna-binding response regulator vicr; |
PDBTitle: crystal structure of an essential response regulator dna binding2 domain, vicrc in enterococcus faecalis, a member of the yycf3 subfamily.
|
Resolution | 1.90 Å |
|
 |
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | |
|
. | . | . | 20 | . | . | . | . | . | . | . | |
|
|
|
|
. | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | 50 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . |
|
|
|  |  |  |  |  |  |  |
| . | . | . | . | . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . |  |  |  |
|
|
|  |  |  |
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | N | N | R | E | K | E | I | L | A | I | L | R | R | N | P | . |
. |
L | I | Q | Q | N | E | I | A | D | M | L | . |
. |
. |
. |
. |
Q | I | S | R | S | R | V | A | A | H | I | M | D | L | M | R | K | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
G | R | I | K | G | K | G | Y | I | L | T | E | Q | E |
Query Conservation |   |
  |   |   |
|
|   |   |
|   |   |   |
|   |   |   |
| . | . |   |
|   |   |   |   |
|
|   |   |   | . | . | . | . | . |   |   |   |
|   |   |   |   |   |   |
|   |   |
|   |   |   | . | . | . | . | . | . | . | . | . | . | . |
|   |   |   |
|   |   |
|
|   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |
|
|   |   |   |
|   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |
|
|
|
|
|
|   |   |   |   |   |   |   |   |   |
|   |
|
|   |
|   |
|
|   |
|   |   |
|
|
Template Sequence |   |
L | T | H | R | E | F | E | L | L | Y | Y | L | A | K | H | I | G | Q | V | M | T | R | E | H | L | L | Q | T | V | W | G | Y | D | Y | F | G | D | V | R | T | V | D | V | T | V | R | R | L | R | E | K | I | E | D | S | P | S | H | P | T | Y | L | V | T | R | R | G | V | G | Y | Y | L | R | N | P | E |
Template Known Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
|
| B |
|  |  |  |  |  |  |  |  | T |
| G | G | G | T | T |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| S | S | T | T | S |
| S | S |  |  |  |  | T | T | T |  |  |  |  |
|
|
|
|
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
157 | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|