 |
Job Description | P37666 | Confidence | 99.41% | Date | Thu Jan 5 11:56:40 GMT 2012 |
Rank | 70 | Aligned Residues | 102 |
% Identity | 14% | Template | c3oj0A_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:glutamyl-trna reductase; |
PDBTitle: crystal structure of glutamyl-trna reductase from thermoplasma2 volcanium (nucleotide binding domain)
|
Resolution | 1.65 Å |
|
 |
  |   |
144 | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | |
|
|
|
|
. | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  | . | . | . | . | . |
|
|
|  |  |
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
H | H | K | T | L | G | I | V | G | M | G | R | I | G | M | A | L | A | Q | R | A | H | F | G | F | N | M | P | I | L | Y | N | A | R | R | H | H | K | E | A | E | E | R | . |
. |
. |
. |
. |
F | N | A | R | Y | C | D | L | D | T | L | L | Q | E | S | D | F | V | C | L | I | L | P | L | T | D | E | T | H | H | L | F |
Query Conservation |   |
  |
|
|
|
|
|
|
|
|   |
|   |
|
|   |   |
|
|   |   |
|   |   |
|
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . |   |   |   |   |   |   |   |
|   |
|
|
|   |   |
|
|
|
|   |   |   |
|
|
|
|   |   |
|   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |
|   |
|
|
|   |
|   |
|
|   |   |   |
|   |   |
|   | . |   |   |
|   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|   |
|
|   | . | . | . |   |   |   |   |
|
|
Template Sequence |   |
G | G | N | K | I | L | L | V | G | N | G | X | L | A | S | E | I | A | P | Y | F | S | . |
Y | P | Q | Y | K | V | T | V | A | G | R | N | I | D | H | V | R | A | F | A | E | K | Y | E | Y | E | Y | V | L | I | N | D | I | D | S | L | I | K | N | N | D | V | I | I | T | A | T | S | . |
. |
. |
S | K | T | P | I | V |
Template Known Secondary structure |   |
|
|
|  |  |  |  |  |
|
| S |  |  |  |  |  |  | G | G | G |
|
| . | T | T | T |
|  |  |  |  |  |  | S |
|  |  |  |  |  |  |  |  |  |  |  | T |
|  |  |  |  |
| S |
|  |  |  |  |  |  | T |
| S |  |  |  |  |
| S |
| . | . | . |
| S | S |
| S | B |
Template Predicted Secondary structure |   |
 |
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  | . |  |
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |
|
|
| . | . | . |
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
17 | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | |
. | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | |
|
|
. | . | . | 90 | . | . |
  |
  |   |
219 | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | A | E | Q | F | A | K | M | K | S | S | A | I | F | I | N | A | G | R | G | P | V | V | D | E | N | A | L | I | A | A | L | Q | K |
Query Conservation |   |
  |   |   |   |
|   |   |
|
|   |
|
|   |
|
|
|   |
|
|
|   |
|
|
|
|   |
|
|   |   |
|
|   |   |
Alig confidence |   |
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   | . | . | . |   |
|   |   |
|   |   |
|
|
|
|
|   |
|   |   |
|
|   |   |   |   |
|   |   |   |
|   |
Template Sequence |   |
E | E | R | . |
. |
. |
S | L | X | P | G | K | L | F | I | D | L | G | N | P | P | N | I | E | R | G | N | N | V | I | T | L | D | E |
Template Known Secondary structure |   |
| G | G | . | . | . | G |
|
| T | T |
|  |  |  |  |
|
| S | S |
| S | B |
|
| S | T | T | S |  |  |  |  |  |
Template Predicted Secondary structure |   |
|  |  | . | . | . |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
93 | . | . | |
|
|
. | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|