Job Description P37666 Confidence 100.00% Date Thu Jan 5 11:56:40 GMT 2012 Rank 27 Aligned Residues 279 % Identity 23% Template c3gvxA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:glycerate dehydrogenase related protein; PDBTitle: crystal structure of glycerate dehydrogenase related2 protein from thermoplasma acidophilum Resolution 2.20 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	I	L	Y	K	A	L	P	D	D	L	L	Q	R	L	Q	E	H	F	T	V	H	Q	V	A	N	L	S	P	Q	T	V	E	Q	N	A	A	I	F	A	E	A	E	G	L	L	G	S	N	E	N	V	N	A	A	L	L	E	K	M	P	K	L	R	A	T	S	T	I	S	V	G	Y	D	N	F	D	V	D
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.
Template Sequence		D	V	Y	V	N	F	P	A	D	G	H	V	R	E	I	A	K	T	V	L	D	G	F	D	L	H	W	Y	P	D	Y	.	.	.	.	.	.	.	.	.	Y	D	A	E	A	Q	V	I	K	.	.	.	.	.	.	D	R	Y	V	L	G	K	R	T	K	X	I	Q	A	I	S	A	G	V	D	H	I	D	V	N
Template Known Secondary structure							S														T	T	T	S					T	T	S		.	.	.	.	.	.	.	.	.				S					S	.	.	.	.	.	.	S						S	S								S	S			T	T	S		G	G
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.										.	.	.	.	.	.	.	40	.							.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	T	A	R	K	I	L	L	M	H	T	P	T	V	L	T	E	T	V	A	D	T	L	M	A	L	V	L	S	T	A	R	R	V	V	E	V	A	E	R	V	K	A	G	E	W	T	A	S	I	G	P	D	W	Y	G	T	D	V	H	H	K	T	L	G	I	V	G	M	G	R	I	G	M	A	L	A	Q	R
Query Conservation
Alig confidence									.																																													.	.	.	.	.
Template Conservation									.																																													.	.	.	.	.
Template Sequence		G	I	P	E	N	V	V	.	L	C	S	N	A	G	A	Y	S	I	S	V	A	E	H	A	F	A	L	L	L	A	H	A	K	N	I	L	E	N	N	E	L	X	K	A	G	I	F	R	Q	S	P	T	.	.	.	.	.	T	L	L	Y	G	K	A	L	G	I	L	G	Y	G	G	I	G	R	R	V	A	H	L
Template Known Secondary structure		G	S		T	T	S		.																									T	T										T	T								.	.	.	.	.				T	T									S
Template Predicted Secondary structure									.																																													.	.	.	.	.
Template SS confidence
		67	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.						.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	H	F	G	F	N	M	P	I	L	Y	N	A	R	R	H	H	K	E	A	E	E	R	F	N	A	R	Y	C	D	L	D	T	L	L	Q	E	S	D	F	V	C	L	I	L	P	L	T	D	E	T	H	H	L	F	G	A	E	Q	F	A	K	M	K	S	S	A	I	F	I	N	A	G	R	G	P	V	V	D	E
Query Conservation
Alig confidence				.																.	.	.
Template Conservation				.																.	.	.
Template Sequence		A	K	.	A	F	G	X	R	V	I	A	Y	T	R	S	S	V	D	.	.	.	Q	N	V	D	V	I	S	E	S	P	A	D	L	F	R	Q	S	D	F	V	L	I	A	I	P	L	T	D	K	T	R	G	X	V	N	S	R	L	L	A	N	A	R	K	N	L	T	I	V	N	V	A	R	A	D	V	V	S	K
Template Known Secondary structure				.			T								S	S				.	.	.	T	T		S				S	S									S										T	T	T	T	T		B	S					T	T			T	T							S		G	G	G	B
Template Predicted Secondary structure				.																.	.	.
Template SS confidence
		141	.		.	.	.	.	.	.	.	150	.	.	.	.	.	.	.				.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure																																																.
Query SS confidence																																																.
Query Sequence		N	A	L	I	A	A	L	Q	K	G	E	I	H	A	A	G	L	D	V	F	E	Q	E	P	L	S	V	D	S	P	L	L	S	M	A	N	V	V	A	V	P	H	I	G	S	A	.	T	H	E	T	R	Y	G	M	A	A	C	A	V	D	N	L	I	D	A	L	Q
Query Conservation																																																.
Alig confidence																																	.	.	.													.
Template Conservation																																	.	.	.
Template Sequence		P	D	X	I	G	F	L	K	E	R	S	D	V	W	Y	L	S	D	V	W	W	N	E	P	E	I	T	E	T	N	L	.	.	.	R	N	A	I	L	S	P	H	V	A	G	G	X	S	G	E	I	X	D	I	A	I	Q	L	A	F	E	N	V	R	N	F	F	E
Template Known Secondary structure												T	T						S			T	T	T	T	S			S				.	.	.	S	S						S		S	S		B	T	T	B																	T
Template Predicted Secondary structure																																	.	.	.
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.				.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions