Phyre 2 alignment of P37666 with c3gvpB

Job Description P37666
Confidence 99.97% Date Thu Jan 5 11:56:40 GMT 2012

Rank 43 Aligned Residues 279

% Identity 14% Template c3gvpB_

PDB info PDB header:hydrolase Chain: B: PDB Molecule:adenosylhomocysteinase 3; PDBTitle: human sahh-like domain of human adenosylhomocysteinase 3

Resolution 2.25 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.									.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.						.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.																											.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.																											.	.	.	.	.
Query Sequence	P	D	D	L	L	Q	R	L	Q	E	H	F	T	V	H	Q	V	A	N	L	S	P	Q	T	V	E	Q	N	A	A	I	.	.	.	.	.	.	.	.	F	A	E	A	E	G	L	L	G	S	N	E	N	V	N	A	A	L	L	E	K	M	P	K	L	R	.	.	.	.	.	A	T	S	T	I	S	V	G	Y	D
Query Conservation																																.	.	.	.	.	.	.	.																											.	.	.	.	.
Alig confidence													.	.																		.	.	.	.	.	.	.	.																											.	.	.	.	.
Template Conservation													.	.
Template Sequence	L	N	E	V	A	A	A	L	A	E	S	G	.	.	F	P	V	F	A	W	K	G	E	S	E	D	D	F	W	W	C	I	D	R	C	V	N	V	E	G	W	Q	P	N	M	I	L	D	D	G	G	D	L	T	H	W	I	Y	K	K	Y	P	N	M	F	K	K	I	K	G	I	V	E	E	S	V	T	G	V	H
Template Known Secondary structure											T	T	.	.							T	T																B	T	T	B			S					S	S	S																T		S
Template Predicted Secondary structure													.	.
Template SS confidence
	264	.	.	.	.	.	270	.	.	.	.	.			.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.

	79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	N	F	D	V	D	A	L	T	A	R	K	I	L	L	M	H	T	P	T	V	L	T	E	T	V	A	D	T	L	M	A	L	V	L	S	T	A	R	R	V	V	E	V	A	E	R	V	K	A	G	E	W	T	A	S	I	G	P	D	W	Y	G	T	D	V	H	H	K	T	L	G	I	V	G	M	G	R	I	G	M
Query Conservation
Alig confidence						.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	R	L	Y	Q	L	.	A	G	K	L	C	V	P	A	M	N	V	N	D	S	V	T	K	Q	K	F	D	N	L	Y	C	C	R	E	S	I	L	D	G	L	K	R	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	M	M	F	G	G	K	Q	V	V	V	C	G	Y	G	E	V	G	K
Template Known Secondary structure						.						S						T	T									T																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T									S
Template Predicted Secondary structure						.																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	342	.	.	.	.		.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.																		.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.

	159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.		.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence	A	L	A	Q	R	A	H	F	G	F	N	M	P	I	L	Y	N	A	R	R	.	H	H	K	E	A	E	E	R	F	N	A	R	Y	C	D	L	D	T	L	L	Q	E	S	D	F	V	C	L	I	L	P	L	T	D	E	T	H	H	L	F	G	A	E	Q	F	A	K	M	K	S	S	A	I	F	I	N	A	G	R
Query Conservation																					.
Alig confidence								.													.																																.	.	.	.
Template Conservation								.																																													.	.	.	.
Template Sequence	G	C	C	A	A	L	K	.	A	M	G	S	I	V	Y	V	T	E	I	D	P	I	C	A	L	Q	A	C	M	D	G	F	R	L	V	K	L	N	E	V	I	R	Q	V	D	I	V	I	T	C	T	G	.	.	.	.	N	K	N	V	V	T	R	E	H	L	D	R	M	K	N	S	C	I	V	C	N	M	G	H
Template Known Secondary structure								.		T	T								S	S										T	T										T	T	T		S						S	S	.	.	.	.		S	S	S	B								S		T	T							S	S
Template Predicted Secondary structure								.																																													.	.	.	.
Template SS confidence
	406	.	.	.	410	.	.		.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.					.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480

	238	.	240		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290			.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure				.																																																			.	.
Query SS confidence				.																																																			.	.
Query Sequence	G	P	V	.	V	D	E	N	A	L	I	A	A	L	Q	K	G	E	I	H	A	A	G	L	D	V	F	E	Q	E	P	L	S	V	D	S	P	L	L	S	M	A	N	V	V	A	V	P	H	I	G	S	A	T	.	.	H	E	T	R	Y	G	M	A	A	C	A	V	D	N	L	I	D	A	L	Q	G	K	V	E
Query Conservation				.																																																			.	.
Alig confidence				.																												.														.	.	.							.	.
Template Conservation																																.														.	.	.
Template Sequence	S	N	T	E	I	D	V	A	S	L	R	T	P	E	L	T	W	E	R	V	R	S	Q	V	D	H	V	I	W	P	D	.	G	K	R	I	V	L	L	A	E	G	R	L	L	.	.	.	N	L	S	C	S	T	V	P	T	F	V	L	S	I	T	A	T	T	Q	A	L	A	L	I	E	L	Y	N	A	P	E	G
Template Known Secondary structure	T	T	T	T	B	T	G	G	G	G		S	T	T								T	T							T	T	.	S							G	G	G	S	B		.	.	.																												T			T	T
Template Predicted Secondary structure																																.														.	.	.
Template SS confidence
	481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.		.	.	.	.	.	.	.	.	520	.	.	.	.				.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.

	315	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	N	C	V	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence	R	Y	K	Q	D
Template Known Secondary structure	S	S		S	S
Template Predicted Secondary structure
Template SS confidence
	557	.	.	560	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions