Job Description P37666 Confidence 100.00% Date Thu Jan 5 11:56:40 GMT 2012 Rank 18 Aligned Residues 321 % Identity 28% Template c2w2kB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:d-mandelate dehydrogenase; PDBTitle: crystal structure of the apo forms of rhodotorula graminis2 d-mandelate dehydrogenase at 1.8a. Resolution 1.85 Å

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		2	.	.	.	.	.	.				.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40			.	.	.	.	.	.	.	.	.	50	.	.								.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.
Predicted Secondary structure									.	.	.																																	.	.													.	.	.	.	.	.	.														.
Query SS confidence									.	.	.																																	.	.													.	.	.	.	.	.	.														.
Query Sequence		K	P	S	V	I	L	Y	.	.	.	K	A	L	P	D	D	L	L	Q	R	L	Q	E	H	F	T	V	H	Q	V	A	N	L	S	P	Q	T	V	E	Q	N	A	.	.	A	I	F	A	E	A	E	G	L	L	G	S	.	.	.	.	.	.	.	N	E	N	V	N	A	A	L	L	E	K	M	P	.	K	L	R
Query Conservation									.	.	.																																	.	.													.	.	.	.	.	.	.														.
Alig confidence									.	.	.																																	.	.													.	.	.	.	.	.	.														.
Template Conservation
Template Sequence		R	P	R	V	L	L	L	G	D	P	A	R	H	L	D	D	L	W	S	D	F	Q	Q	K	F	E	V	I	P	A	N	L	T	T	H	D	G	F	K	Q	A	L	R	E	K	R	Y	G	D	F	E	A	I	I	K	L	A	V	E	N	G	T	E	S	Y	P	W	N	A	D	L	I	S	H	L	P	S	S	L	K
Template Known Secondary structure									S	S			S	S												S																			T	T	T	T				S						S	T	T	T	T	G	G	G			B						T	T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.					.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure																																																																		.	.	.	.
Query SS confidence																																																																		.	.	.	.
Query Sequence		A	T	S	T	I	S	V	G	Y	D	N	F	D	V	D	A	L	T	A	R	K	I	L	L	M	H	T	P	T	V	L	T	E	T	V	A	D	T	L	M	A	L	V	L	S	T	A	R	R	V	V	E	V	A	E	R	V	K	A	G	E	W	T	A	.	.	.	.	S	I	G	P	D	W	Y	G	T	D	V	H
Query Conservation																																																																		.	.	.	.
Alig confidence																																																																		.	.	.	.
Template Conservation
Template Sequence		V	F	A	A	A	G	A	G	F	D	W	L	D	L	D	A	L	N	E	R	G	V	A	F	A	N	S	R	G	A	G	D	T	A	T	S	D	L	A	L	Y	L	I	L	S	V	F	R	L	A	S	Y	S	E	R	A	A	R	T	G	D	P	E	T	F	N	R	V	H	L	E	I	G	K	S	A	H	N	P	R
Template Known Secondary structure						S	S	S			T	T	B								T	T							T	T	T	T																		T									T	T														T	T	T				S	T
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.		.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.			.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure																						.																								.	.
Query SS confidence																						.																								.	.
Query Sequence		H	K	T	L	G	I	V	G	M	G	R	I	G	M	A	L	A	Q	R	A	.	H	F	G	F	N	M	P	I	L	Y	N	A	R	R	H	H	K	E	A	E	E	R	F	.	.	N	A	R	Y	C	D	L	D	T	L	L	Q	E	S	D	F	V	C	L	I	L	P	L	T	D	E	T	H	H	L	F	G	A	E
Query Conservation																						.																								.	.
Alig confidence																						.		.																						.	.
Template Conservation																								.
Template Sequence		G	H	V	L	G	A	V	G	L	G	A	I	Q	K	E	I	A	R	K	A	V	H	.	G	L	G	M	K	L	V	Y	Y	D	V	A	P	A	D	A	E	T	E	K	A	L	G	A	E	R	V	D	S	L	E	E	L	A	R	R	S	D	C	V	S	V	S	V	P	Y	M	K	L	T	H	H	L	I	D	E	A
Template Known Secondary structure		T	S								S													.	T	T									S	S											T					S	S									S									S	G	G	G	T	T		B
Template Predicted Secondary structure																								.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.		.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	F	A	K	M	K	S	S	A	I	F	I	N	A	G	R	G	P	V	V	D	E	N	A	L	I	A	A	L	Q	K	G	E	I	H	A	A	G	L	D	V	F	E	Q	E	P	L	S	V	D	S	P	L	L	S	M	A	N	V	V	A	V	P	H	I	G	S	A	T	H	E	T	R	Y	G	M	A	A	C	A
Query Conservation
Alig confidence																																																.
Template Conservation																																																.
Template Sequence		F	F	A	A	M	K	P	G	S	R	I	V	N	T	A	R	G	P	V	I	S	Q	D	A	L	I	A	A	L	K	S	G	K	L	L	S	A	G	L	D	V	H	E	F	E	P	.	N	V	S	K	E	L	I	E	M	K	H	V	T	L	T	T	H	I	G	G	V	A	I	E	T	F	H	E	F	E	R	L	T
Template Known Secondary structure						S		T	T							S		G	G	G	B											T	T	S							S	S		T	T	T	T	.	S							T	S	S	S					S	S		T	T		S
Template Predicted Secondary structure																																																.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.		.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	N	L	I	D	A	L	Q	G	K	V	E	K	N	C	V	N	P	H	V	A	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	T	N	I	D	R	F	L	L	Q	G	K	P	L	L	T	P	A	G	K	V	F	A
Template Known Secondary structure											T					S	S	B		S	S
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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