Job Description P37666 Confidence 99.97% Date Thu Jan 5 11:56:40 GMT 2012 Rank 45 Aligned Residues 268 % Identity 15% Template c2vhyB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:alanine dehydrogenase; PDBTitle: crystal structure of apo l-alanine dehydrogenase from2 mycobacterium tuberculosis Resolution 2.3 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.																.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	L	P	D	D	L	L	Q	R	L	Q	E	H	F	T	V	H	Q	V	A	N	L	S	P	Q	T	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Q	N	A	A	I	F	A	E	A	E	G	L	L	G	S	N	E	N	V	N	A	A	L	L	E	K	M	P	K	L	R	A	T	S	T	I	S
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	I	T	P	A	G	V	A	E	L	T	R	R	G	H	E	V	L	I	Q	A	G	A	G	E	G	S	A	I	T	D	A	D	F	K	A	A	G	A	Q	L	V	G	T	A	D	Q	V	W	A	D	A	D	L	L	L	K	V	K	E	P	I	A	A	E	Y	G	R	L	R	H	G	Q	I	L	F	T	F	L	H
Template Known Secondary structure		S											T	T	T						B	T	T	T	T	G	G	G	T			S					T	T					B	S	S						S	S		S					S	S				G	G	G	G	G	G			S	S	S
Template Predicted Secondary structure
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140		.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																																																																				.
Query SS confidence																																																																				.
Query Sequence		V	G	Y	D	N	F	D	V	D	A	L	T	A	R	K	I	L	L	M	H	T	P	T	V	L	T	E	T	V	A	D	T	L	M	A	L	V	L	S	T	A	R	R	V	V	E	V	A	E	R	V	K	A	G	E	W	T	A	S	I	G	P	D	W	Y	G	.	T	D	V	H	H	K	T	L	G	I	V	G	M
Query Conservation																																																																				.
Alig confidence																																																																				.
Template Conservation
Template Sequence		L	A	A	S	R	A	C	T	D	A	L	L	D	S	G	T	T	S	I	A	Y	E	T	V	Q	T	A	D	G	A	L	P	L	L	A	P	M	S	E	V	A	G	R	L	A	A	Q	V	G	A	Y	H	L	M	R	T	Q	G	G	R	G	V	L	M	G	G	V	P	G	V	E	P	A	D	V	V	V	I	G	A
Template Known Secondary structure		G	G	G										T	T	T						G	G	G				T	T	S			T	T	T																		T	T	S	G	G	G	T	S					T	T		B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.										.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.
Query Sequence		G	R	I	G	M	A	L	A	Q	R	A	H	F	G	F	N	M	P	I	L	Y	N	A	R	R	H	H	K	E	A	E	E	R	F	N	A	R	Y	C	.	.	.	.	.	.	.	.	.	D	L	D	T	L	L	Q	E	S	D	F	V	C	L	I	L	P	L	T	D	E	T	H	H	L	F	G	A	E	Q	F	A
Query Conservation																																									.	.	.	.	.	.	.	.	.
Alig confidence														.																											.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	T	A	G	Y	N	A	A	R	I	A	N	.	G	M	G	A	T	V	T	V	L	D	I	N	I	D	K	L	R	Q	L	D	A	E	F	C	G	R	I	H	T	R	Y	S	S	A	Y	E	L	E	G	A	V	K	R	A	D	L	V	I	G	A	V	L	V	.	.	.	.	.	.	.	.	.	.	.	.	V	A
Template Known Secondary structure		S												.		T	T								S												T	T	T		S																		S									.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure														.																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.													.	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.										.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.
Query Sequence		K	M	K	S	S	A	I	F	I	N	A	G	R	G	P	V	V	D	E	N	A	L	I	A	A	L	Q	K	.	.	.	.	.	.	.	.	.	G	E	I	H	A	A	G	L	D	V	F	E	Q	E	P	L	S	V	D	S	P	L	L	S	M	A	N	V	V	A	V	P	H	I	G	S	A	T
Query Conservation																														.	.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	M	K	P	G	A	V	L	V	D	I	T	L	F	Y	C	M	P	A	S	V	P	K	T	S	T	Y	A	L	T	N	A	T	M	P	Y	V	L	E	L	A	D	H	G	W	R	A	A	C	R	S	N	P	A	L	A	K	G	L	S	T	H	E	G	A	L	L	S	E	R	V	A	T	D	L
Template Known Secondary structure					T	T													G	G	G	S																														S						T	T					T	T											T
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions