Job Description P37666 Confidence 100.00% Date Thu Jan 5 11:56:40 GMT 2012 Rank 23 Aligned Residues 310 % Identity 29% Template c2pi1C_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:d-lactate dehydrogenase; PDBTitle: crystal structure of d-lactate dehydrogenase from aquifex2 aeolicus complexed with nad and lactic acid Resolution 2.12 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																																																		.
Query SS confidence																																																		.
Query Sequence		I	L	Y	K	A	L	P	D	D	L	L	Q	R	L	Q	E	H	F	T	V	H	Q	V	A	N	L	S	P	Q	T	V	E	Q	N	A	A	I	F	A	E	A	E	G	L	L	G	S	N	.	E	N	V	N	A	A	L	L	E	K	M	P	K	L	R	A	T	S	T	I	S	V	G	Y	D	N	F	D	V	D	A
Query Conservation																																																		.
Alig confidence																																																		.
Template Conservation
Template Sequence		V	L	F	T	S	V	P	Q	E	D	V	P	F	Y	Q	E	A	L	K	D	L	S	L	K	I	Y	T	T	D	V	S	K	V	P	E	N	E	L	K	K	A	E	L	I	S	V	F	V	Y	D	K	L	T	E	E	L	L	S	K	X	P	R	L	K	L	I	H	T	R	S	V	G	F	D	H	I	D	L	D	Y
Template Known Secondary structure						S			G	G	G								T	T	T	S						S	S		G	G	G	S									S						T	T	S		B						T	T		T	T							S	S	S			T	T	B
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	A	R	K	I	L	L	M	H	T	P	T	V	L	T	E	T	V	A	D	T	L	M	A	L	V	L	S	T	A	R	R	V	V	E	V	A	E	R	V	K	A	G	E	W	T	A	S	I	G	P	D	W	Y	G	T	D	V	H	H	K	T	L	G	I	V	G	M	G	R	I	G	M	A	L	A	Q	R	A
Query Conservation
Alig confidence																																																					.	.
Template Conservation																																																					.	.
Template Sequence		C	K	K	K	G	I	L	V	T	H	I	P	A	Y	S	P	E	S	V	A	E	H	T	F	A	X	I	L	T	L	V	K	R	L	K	R	I	E	D	R	V	K	K	L	N	F	S	Q	D	S	E	.	.	I	L	A	R	E	L	N	R	L	T	L	G	V	I	G	T	G	R	I	G	S	R	V	A	X	Y	G
Template Known Secondary structure						T							T	T	S																		T	T										T	T						G	G	.	.	G					G	G	G	S								S
Template Predicted Secondary structure																																																					.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.			.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	F	G	F	N	M	P	I	L	Y	N	A	R	R	H	H	K	E	A	E	E	R	F	N	A	R	Y	C	D	L	D	T	L	L	Q	E	S	D	F	V	C	L	I	L	P	L	T	D	E	T	H	H	L	F	G	A	E	Q	F	A	K	M	K	S	S	A	I	F	I	N	A	G	R	G	P	V	V	D	E	N
Query Conservation
Alig confidence			.													.
Template Conservation			.													.
Template Sequence		L	.	A	F	G	X	K	V	L	C	Y	D	V	V	.	K	R	E	D	L	K	E	K	G	C	V	Y	T	S	L	D	E	L	L	K	E	S	D	V	I	S	L	H	V	P	Y	T	K	E	T	H	H	X	I	N	E	E	R	I	S	L	X	K	D	G	V	Y	L	I	N	T	A	R	G	K	V	V	D	T	D
Template Known Secondary structure			.		T	T								S	S	.									T														S										T	T	T	T	T		B								S		T	T							S		G	G	G	B
Template Predicted Secondary structure			.													.
Template SS confidence
		161		.	.	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.																.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	L	I	A	A	L	Q	K	G	E	I	H	A	A	G	L	D	V	F	E	Q	E	P	L	S	V	D	S	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	S	M	A	N	V	V	A	V	P	H	I	G	S	A	T	H	E	T	R	Y	G	M	A	A	C	A	V	D	N	L	I	D	A	L
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	L	Y	R	A	Y	Q	R	G	K	F	S	G	L	G	L	D	V	F	E	D	E	E	I	L	I	L	K	K	Y	T	E	G	K	A	T	D	K	N	L	K	I	L	E	L	A	C	K	D	N	V	I	I	T	P	H	I	A	Y	Y	T	D	K	S	L	E	R	I	R	E	E	T	V	K	V	V	K	A	F	V
Template Known Secondary structure									T	T								S			T	T						T	T	G	G	G	G	T														T	S	T	T						S		T	T		S
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	K	V	E	K	N	C	V	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	G	D	L	E	Q	I	K	G	N
Template Known Secondary structure		S	S		T	T	T	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions