Phyre 2 alignment of P37666 with c2bruB

Job Description P37666
Confidence 99.97% Date Thu Jan 5 11:56:40 GMT 2012

Rank 42 Aligned Residues 272

% Identity 15% Template c2bruB_

PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:nad(p) transhydrogenase subunit alpha; PDBTitle: complex of the domain i and domain iii of escherichia coli2 transhydrogenase

Resolution UNK

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.					.	.	.	.	.	.	.	.										40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.									.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.									.	.	.	.	.	.	.	.	.
Query Sequence	A	L	P	D	D	L	L	Q	R	L	Q	E	H	F	T	V	H	Q	V	A	N	L	.	.	.	.	S	P	Q	T	V	E	Q	N	.	.	.	.	.	.	.	.	.	A	A	I	F	A	E	A	E	G	L	L	G	S	N	E	N	V	N	A	A	L	L	E	K	M	P	K	L	R	A	T	S	T	I	S	V	G
Query Conservation																							.	.	.	.									.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.									.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	A	A	T	P	K	T	V	E	Q	L	L	K	L	G	F	T	V	A	V	E	S	G	A	G	Q	L	A	S	F	D	D	K	A	F	V	Q	A	G	A	E	I	V	E	G	N	S	V	W	Q	S	E	I	I	L	K	V	N	A	P	L	D	D	E	I	A	L	L	N	P	G	T	T	L	V	S	F	I	W	P	A
Template Known Secondary structure	S												T	T							T	T					T	T	S		S							T						S	G	G	G	G	S	S	S					S	S												S										T	T
Template Predicted Secondary structure
Template SS confidence
	1017	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.

	77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.			.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																															.	.
Query SS confidence																															.	.
Query Sequence	Y	D	N	F	D	V	D	A	L	T	A	R	K	I	L	L	M	H	T	P	T	V	L	T	E	T	V	A	D	T	.	.	L	M	A	L	V	L	S	T	A	R	R	V	V	E	V	A	E	R	V	K	A	G	E	W	T	A	S	I	G	P	D	W	Y	G	T	D	V	H	H	K	T	L	G	I	V	G	M	G
Query Conservation																															.	.
Alig confidence																															.	.																																			.	.
Template Conservation																																																																			.	.
Template Sequence	Q	N	P	E	L	M	Q	K	L	A	E	R	N	V	T	V	M	A	M	D	S	V	P	R	I	S	R	A	Q	S	L	D	A	L	S	S	M	A	N	I	A	G	Y	R	A	I	V	E	A	A	H	E	F	G	R	F	F	T	G	Q	I	T	A	A	G	K	.	.	V	P	P	A	K	V	M	V	I	G	A	G
Template Known Secondary structure	T											T	T						S	S					S																													S	S		S	S			B		S	S		B	.	.										S	T	T
Template Predicted Secondary structure																																																																			.	.
Template SS confidence
	1097	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.			.	.	.	.	.	.	.	1170	.	.	.	.

	155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.		.	.	.	.	.	.	.	190	.	.	.															.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.		.	.	.	.	.
Predicted Secondary structure																													.												.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Query SS confidence																													.												.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Query Sequence	R	I	G	M	A	L	A	Q	R	A	H	F	G	F	N	M	P	I	L	Y	N	A	R	R	H	H	K	E	.	A	E	E	R	F	N	A	R	Y	C	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	T	L	L	Q	E	S	D	F	V	C	L	I	L	P	L	T	D	E	.	T	H	H	L	F
Query Conservation																													.												.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Alig confidence												.																	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Conservation												.
Template Sequence	V	A	G	L	A	A	I	G	A	A	N	.	S	L	G	A	I	V	R	A	F	D	T	R	P	E	V	K	E	Q	V	Q	S	M	G	A	E	F	L	E	L	D	M	S	D	A	F	I	K	A	E	M	E	L	F	A	A	Q	A	K	E	V	D	I	I	V	T	T	A	L	I	P	G	K	P	A	P	K	L	I
Template Known Secondary structure	T											.			T								S	S	T									T	T										T	T																	S								B	T	T	B						B
Template Predicted Secondary structure												.
Template SS confidence
	1175	.	.	.	.	1180	.	.	.	.	.		.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.

	219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.			.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure																			.	.
Query SS confidence																			.	.
Query Sequence	G	A	E	Q	F	A	K	M	K	S	S	A	I	F	I	N	A	G	.	.	R	G	P	V	V	D	E	N	A	L	I	A	A	L	Q	K	G	E	I	H	A	A	G	L	D	V	F	E	Q	E	P	L	S	V	D	S	P	L	L	S	M	A	N	V	V	A	V	P	H	I	G	S	A	T	H	E	T	R	Y	G
Query Conservation																			.	.
Alig confidence																			.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Sequence	T	R	E	M	V	D	S	M	K	A	G	S	V	I	V	D	L	A	A	Q	N	G	G	N	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Y	T	V	P	G	E	I	F	T	T	E	N	G	V	K	V	I	.	G	Y	T	D	L	P	G	R	L	P	T	Q
Template Known Secondary structure						T	T	S		S	S						S	T	T	T	T	T		S	B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S			T	T	S					S	S	S					.			T	T	T	T	T	S	S
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template SS confidence
	1268	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.																									.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310		.	.	.	.	.	.	.	.	.	1320	.	.

	297	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	M	A	A	C	A	V	D	N	L	I	D	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence	S	S	Q	L	Y	G	T	N	L	V	N	L	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
	1323	.	.	.	.	.	.	1330	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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