Job Description P37666 Confidence 100.00% Date Thu Jan 5 11:56:40 GMT 2012 Rank 41 Aligned Residues 275 % Identity 17% Template c1pjcA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:protein (l-alanine dehydrogenase); PDBTitle: l-alanine dehydrogenase complexed with nad Resolution 2.00 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30					.	.	.	.	.	.	.	.	.	40											.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.											.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.											.	.	.	.	.	.	.	.	.	.
Query Sequence		A	L	P	D	D	L	L	Q	R	L	Q	E	H	F	T	V	H	Q	V	A	N	.	.	.	.	L	S	P	Q	T	V	E	Q	N	A	.	.	.	.	.	.	.	.	.	.	A	I	F	A	E	A	E	G	L	L	G	S	N	E	N	V	N	A	A	L	L	E	K	M	P	K	L	R	A	T	S	T	I	S	V
Query Conservation																							.	.	.	.											.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.											.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	L	S	P	S	S	V	R	T	L	V	E	A	G	H	T	V	F	I	E	T	Q	A	G	I	G	A	G	F	A	D	Q	D	Y	V	Q	A	G	A	Q	V	V	P	S	A	K	D	A	W	S	R	E	M	V	V	K	V	K	E	P	L	P	A	E	Y	D	L	M	Q	K	D	Q	L	L	F	T	Y	L	H	L
Template Known Secondary structure		S											T	T	T							T	T	T	T	G	G	G	T										T					S	S						T	S	S					S	S				G	G	G	G	G	G			T	T									G
Template Predicted Secondary structure
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.		.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																																																																				.
Query SS confidence																																																																				.
Query Sequence		G	Y	D	N	F	D	V	D	A	L	T	A	R	K	I	L	L	M	H	T	P	T	V	L	T	E	T	V	A	D	T	L	M	A	L	V	L	S	T	A	R	R	V	V	E	V	A	E	R	V	K	A	G	E	W	T	A	S	I	G	P	D	W	Y	G	T	.	D	V	H	H	K	T	L	G	I	V	G	M	G
Query Conservation																																																																				.
Alig confidence																																																																				.
Template Conservation
Template Sequence		A	A	A	R	E	L	T	E	Q	L	M	R	V	G	L	T	A	I	A	Y	E	T	V	E	L	P	N	R	S	L	P	L	L	T	P	M	S	I	I	A	G	R	L	S	V	Q	F	G	A	R	F	L	E	R	Q	Q	G	G	R	G	V	L	L	G	G	V	P	G	V	K	P	G	K	V	V	I	L	G	G	G
Template Known Secondary structure		G	G												T						G	G	G				T	T	S			T	T	T																			T	S	G	G	G	T	S					T	T		B	T	T	B											S
Template Predicted Secondary structure
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.										.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.		.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.																												.
Query SS confidence																													.	.	.	.	.	.	.	.	.																												.
Query Sequence		R	I	G	M	A	L	A	Q	R	A	H	F	G	F	N	M	P	I	L	Y	N	A	R	R	H	H	K	.	.	.	.	.	.	.	.	.	E	A	E	E	R	F	N	A	R	Y	C	D	L	D	T	L	L	Q	E	S	D	F	V	C	L	I	L	.	P	L	T	D	E	T	H	H	L	F	G	A	E	Q	F	A
Query Conservation																													.	.	.	.	.	.	.	.	.																												.
Alig confidence													.																.	.	.	.	.	.	.	.	.																												.
Template Conservation													.
Template Sequence		V	V	G	T	E	A	A	K	M	A	V	.	G	L	G	A	Q	V	Q	I	F	D	I	N	V	E	R	L	S	Y	L	E	T	L	F	G	S	R	V	E	L	L	Y	S	N	S	A	E	I	E	T	A	V	A	E	A	D	L	L	I	G	A	V	L	V	P	G	R	R	A	P	I	L	V	P	A	S	L	V	E
Template Known Secondary structure													.		T	T								S													G	G	G	S																T		S									T	T	S	S					B						T
Template Predicted Secondary structure													.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.		.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		225	.	.	.	.	230	.	.	.	.	.	.			.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.			.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure														.	.																																															.	.
Query SS confidence														.	.																																															.	.
Query Sequence		K	M	K	S	S	A	I	F	I	N	A	G	.	.	R	G	P	V	V	D	E	N	A	L	I	A	A	L	Q	K	G	E	I	H	A	A	G	L	D	V	F	E	Q	E	P	L	S	V	D	S	P	L	L	S	M	A	N	V	V	A	.	.	V	P	H	I	G	S	A	T	H	E	T	R	Y	G	M	A	A	C
Query Conservation														.	.																																															.	.
Alig confidence														.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.											.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.
Template Sequence		Q	M	R	T	G	S	V	I	V	D	V	A	V	D	Q	G	G	C	V	E	T	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	P	T	S	H	T	Q	P	T	Y	E	V	F	G	V	V	H	Y	G	V	P	N	M	P	G	A	V	P	W	.	.	.	T	A	T	Q	A
Template Known Secondary structure		T	S		T	T						T	T		T	T			S	B	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	S	S						T	T							S		G	G	G	G				.	.	.
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.																						.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.				.	.	.	310	.
		301	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	D	N	L	I	D	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	N	N	S	T	L	P	Y	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		312	.	.	.	.	.	.	.	320

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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