Job Description P37666 Confidence 100.00% Date Thu Jan 5 11:56:40 GMT 2012 Rank 39 Aligned Residues 306 % Identity 15% Template c1l7eC_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:nicotinamide nucleotide transhydrogenase, PDBTitle: crystal structure of r. rubrum transhydrogenase domain i2 with bound nadh Resolution 1.90 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.					.	.	.	.	.	.	.												.	40	.	.	.	.	.	.	.	.	.	50	.						.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.								.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.
Query SS confidence																								.	.	.	.								.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.
Query Sequence		A	L	P	D	D	L	L	Q	R	L	Q	E	H	F	T	V	H	Q	V	A	N	L	.	.	.	.	S	P	Q	T	V	E	Q	.	.	.	.	.	.	.	.	.	.	.	N	A	A	I	F	A	E	A	E	G	L	L	G	.	.	.	.	.	S	N	E	N	V	N	A	A	L	L	E	K	M	P	K	L	R	A
Query Conservation																								.	.	.	.								.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.
Alig confidence																								.	.	.	.								.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.
Template Conservation
Template Sequence		A	I	S	P	E	V	V	K	K	L	V	G	L	G	F	E	V	I	V	E	Q	G	A	G	V	G	A	S	I	T	D	D	A	L	T	A	A	G	A	T	I	A	S	T	A	A	Q	A	L	S	Q	A	D	V	V	W	K	V	Q	R	P	M	T	A	E	E	G	T	D	E	V	A	L	I	K	E	G	A	V	L
Template Known Secondary structure		S												T	T							T	T	T	T	G	G	G	T									T	T					S	S						T	T		S											G	G	G	S	S		S	G	G	G	S		T	T
Template Predicted Secondary structure
Template SS confidence
		817	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.			.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.
Query SS confidence																																							.	.
Query Sequence		T	S	T	I	S	V	G	Y	D	N	F	D	V	D	A	L	T	A	R	K	I	L	L	M	H	T	P	T	V	L	T	E	T	V	A	D	T	.	.	L	M	A	L	V	L	S	T	A	R	R	V	V	E	V	A	E	R	V	K	A	G	E	W	T	A	S	I	G	P	D	W	Y	G	T	D	V	H	H	K	T
Query Conservation																																							.	.
Alig confidence																																							.	.																																			.	.
Template Conservation																																																																											.	.
Template Sequence		M	C	H	L	G	A	L	T	N	R	P	V	V	E	A	L	T	K	R	K	I	T	A	Y	A	M	E	L	M	P	R	I	S	R	A	Q	S	M	D	I	L	S	S	Q	S	N	L	A	G	Y	R	A	V	I	D	G	A	Y	E	F	A	R	A	F	P	M	M	M	T	A	A	G	T	.	.	V	P	P	A	R
Template Known Secondary structure							G	G	G		S									T	T						G	G	G					G	G	G	T	T	T																							S	S		S	S					S	S			.	.
Template Predicted Secondary structure																																																																											.	.
Template SS confidence
		897	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.			970	.	.	.	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.		.	.	.	.	.	.	.	190	.	.	.					.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210		.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure																																					.												.	.	.	.																		.
Query SS confidence																																					.												.	.	.	.																		.
Query Sequence		L	G	I	V	G	M	G	R	I	G	M	A	L	A	Q	R	A	H	F	G	F	N	M	P	I	L	Y	N	A	R	R	H	H	K	E	.	A	E	E	R	F	N	A	R	Y	C	D	.	.	.	.	L	D	T	L	L	Q	E	S	D	F	V	C	L	I	L	P	L	.	T	D	E	T	H	H	L	F	G	A	E
Query Conservation																																					.												.	.	.	.																		.
Alig confidence																				.																	.												.	.	.	.																		.
Template Conservation																				.
Template Sequence		V	L	V	F	G	V	G	V	A	G	L	Q	A	I	A	T	A	K	.	R	L	G	A	V	V	M	A	T	D	V	R	A	A	T	K	E	Q	V	E	S	L	G	G	K	F	I	K	Q	A	E	A	V	L	K	E	L	V	K	T	D	I	A	I	T	T	A	L	I	P	G	K	P	A	P	V	L	I	T	E	E
Template Known Secondary structure								S												.		T	T								S	S	T	T	S					T	T	T	T															T	T		S									T	T	S						S
Template Predicted Secondary structure																				.
Template SS confidence
		975	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.		.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.			.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280		.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.																																													.
Query SS confidence																	.	.																																													.
Query Sequence		Q	F	A	K	M	K	S	S	A	I	F	I	N	A	G	.	.	R	G	P	V	V	D	E	N	A	L	I	A	A	L	Q	K	G	E	I	H	A	A	G	L	D	V	F	E	Q	E	P	L	S	V	D	S	P	L	L	S	M	A	N	V	.	V	A	V	P	H	I	G	S	A	T	H	E	T	R	Y	G	M	A
Query Conservation																	.	.																																													.
Alig confidence																	.	.																																													.
Template Conservation
Template Sequence		M	V	T	K	M	K	P	G	S	V	I	I	D	L	A	V	E	A	G	G	N	C	P	L	S	E	P	G	K	I	V	V	K	H	G	V	K	I	V	G	H	T	N	V	P	S	R	V	A	A	D	A	S	P	L	F	A	K	N	L	L	N	F	L	T	P	H	V	D	K	D	T	K	T	L	V	M	K	L	E
Template Known Secondary structure					T	S		T	T						T	T	G	G	G	T		S	S	T	T			T	T						T	T							S		G	G	G	G	G																	G	G	G			T	T	T	T						T	T
Template Predicted Secondary structure
Template SS confidence
		1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	C	A	V	D	N	L	I	D	A	L	Q	G	K	V	E	K	N	C	V	N	P	H	V
Query Conservation
Alig confidence																.	.	.	.
Template Conservation																.	.	.	.
Template Sequence		D	E	T	V	S	G	T	C	V	T	R	D	G	A	.	.	.	.	I	V	H	P	A	L
Template Known Secondary structure		S											T	T		.	.	.	.			S
Template Predicted Secondary structure																.	.	.	.
Template SS confidence
		1160	.	.	.	.	.	.	.	.	.	1170	.	.	.					.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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