 |
Job Description | P37666 | Confidence | 96.32% | Date | Thu Jan 5 11:56:40 GMT 2012 |
Rank | 350 | Aligned Residues | 95 |
% Identity | 18% | Template | c1j5pA_ |
PDB info |
PDB header:oxidoreductase | Chain: A: PDB Molecule:aspartate dehydrogenase; |
PDBTitle: crystal structure of aspartate dehydrogenase (tm1643) from thermotoga2 maritima at 1.9 a resolution
|
Resolution | 1.90 Å |
|
 |
  |   |
147 | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |
|
|
|  |  |
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |
|
|
|
|
|  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | L | G | I | V | G | M | G | R | I | G | M | A | L | A | Q | R | A | H | F | G | F | N | M | P | I | L | Y | N | A | R | R | H | H | K | E | A | E | E | R | F | N | A | R | Y | C | D | L | D | T | L | L | Q | E | S | D | F | V | C | L | I | L | P | L | T | D | E | T | H | H | L | F | G | A | E | Q | F | A | K | M |
Query Conservation |   |
|
|
|
|
|
|   |
|   |
|
|   |   |
|
|   |   |
|   |   |
|
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|   |   |
|
|
|
|   |   |   |
|
|
|
|   |   |
|   |   |
|
|   |   |   |   |
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|
|
|   |
|   |
|
|   |   |   |   |   |   |   |   | . | . |   |   | . |
|   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   | . | . | . | . |   |   |   |   |
|   |
|
|   |   |
|   | . | . | . | . | . |   |   |   |
|   |   |   |   |   |   |   |
|
Template Sequence |   |
T | V | L | I | I | G | M | G | N | I | G | K | K | L | V | E | L | G | N | . |
. |
F | E | . |
K | I | Y | A | Y | D | R | I | S | K | D | I | P | G | V | V | R | L | D | E | F | Q | V | . |
. |
. |
. |
P | S | D | V | S | T | V | V | E | C | A | S | . |
. |
. |
. |
. |
P | E | A | V | K | E | Y | S | L | Q | I | L |
Template Known Secondary structure |   |
 |  |  |  |  |
|
| S |  |  |  |  |  |  |  |  |  | S |
| . | . |
| S | . |  |  |  |  |  |
| S | S |
|
|
|
| S | S | S |  |  |
| S | S |
|
|
| . | . | . | . |
| T | T |
|
|  |  |  |  |
| S |
| . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  | T |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|
| . | . |
|
| . |  |  |  |  |  |  |
|
|  |  |  |
|  |  |  |
|
|  |  |  |  |  |
| . | . | . | . |
|
|
|
|
|  |  |  |  |  |
|
| . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | |
|
. | . | |
. | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | |
|
|
|
. | . | . | . | 50 | . | . | . | . | . | . | . | |
|
|
|
|
. | . | 60 | . | . | . | . | . | . | . | . | . |
  |
  |   |
227 | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | |
|
|
. | . | . | . | 250 | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|  |  |  | . | . | . |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
Query Sequence |   |
K | S | S | A | I | F | I | N | A | G | R | G | P | V | V | D | E | N | A | . |
. |
. |
L | I | A | A | L | Q | K | G |
Query Conservation |   |
|   |
|
|   |
|
|
|   |
|
|
|   |
|
|
|
|   |
| . | . | . |
|   |   |
|
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |
|   |   |
|
|
|   |
|   |
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
Template Sequence |   |
K | N | P | V | N | Y | I | I | I | S | T | S | A | F | A | D | E | V | F | R | E | R | F | F | S | E | L | K | N | S |
Template Known Secondary structure |   |
T | S | S | S |  |  |  |  |
|
| G | G | G | G | G | S |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
Template Predicted Secondary structure |   |
 |
|
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|