Job Description P77625 Confidence 98.56% Date Thu Jan 5 12:31:15 GMT 2012 Rank 110 Aligned Residues 123 % Identity 25% Template c1yj5B_ PDB info PDB header:transferase Chain: B: PDB Molecule:5' polynucleotide kinase-3' phosphatase catalytic domain; PDBTitle: molecular architecture of mammalian polynucleotide kinase, a dna2 repair enzyme Resolution 2.80 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	G	F	L	F	D	L	D	G	T	L	V	D	S	L	P	A	V	E	R	A	W	S	N	W	A	R	R	H	G	L	A	P	E	E	V	L	A	F	I	H	G	K	Q	A	I	T	S	L	R	H	F	M	A	G	K	S	E	A	D	I	A	A	E	F	T	R	L	E	H	I	E	A	T	E	T	E	G	I	T
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	V	A	A	F	D	L	D	G	T	L	I	T	T	R	S	G	K	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	P	T	S	P	S	D	W	R	I
Template Known Secondary structure								S	B	T	T	T				S	S		S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S		S	S	T	T
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.																																																				.	.	.	.	.	.	190	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.													110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	L	P	G	A	I	A	L	L	S	H	L	N	K	A	G	I	P	W	A	I	V	T	S	G	S	.	.	.	.	.	.	.	.	.	.	.	.	M	P	V	A	R	A	R	H	K	I	A	G	L	P	A	P	E	V	F	V	T	A	E	R	V	K	R	G	K	P	E	P	D	A	Y	L	L	G	A	Q	L	L
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation																																																								.
Template Sequence		L	Y	P	E	I	P	K	K	L	Q	E	L	A	A	E	G	Y	K	L	V	I	F	T	N	Q	X	G	I	G	R	G	K	L	P	A	E	V	F	K	G	K	V	E	A	V	L	E	K	L	G	V	P	F	Q	.	V	L	V	A	T	H	A	G	L	N	R	K	P	V	S	G	X	W	D	H	L	Q	E	Q	A
Template Known Secondary structure		S		T	T											T	T														T	T	S	S																	T	S				.						S	S	S	S	S	S	T	T	S	T									T	T
Template Predicted Secondary structure																																																								.
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.		.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
		152					.	.	.	.	.	.	.	160	.	.	.																		.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	.	.	.	.	L	A	P	Q	E	C	V	V	V	E	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	P	A	G	V	L	S	G	L	A	A	G	C	H	V
Query Conservation			.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	E	G	I	P	I	S	V	E	D	S	V	F	V	G	D	A	A	G	R	L	A	N	W	A	P	G	R	K	K	K	D	F	S	C	A	D	R	L	F	A	L	N	V	G	L	P	F
Template Known Secondary structure		S	S	S					S	T	T						S		S		B		T	T	S	S	T	T			S			S												T
Template Predicted Secondary structure
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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