Job Description P21866 Confidence 100.00% Date Thu Jan 5 11:38:36 GMT 2012 Rank 4 Aligned Residues 217 % Identity 34% Template c3r0jA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:possible two component system response transcriptional PDBTitle: structure of phop from mycobacterium tuberculosis Resolution 2.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.
Predicted Secondary structure																																																																										.
Query SS confidence																																																																										.
Query Sequence		M	T	N	V	L	I	V	E	D	E	Q	A	I	R	R	F	L	R	T	A	L	E	G	D	G	M	R	V	F	E	A	E	T	L	Q	R	G	L	L	E	A	A	T	R	K	P	D	L	I	I	L	D	L	G	L	P	D	G	D	G	I	E	F	I	R	D	L	R	Q	W	S	A	.	V	P	V	I	V	L	S
Query Conservation																																																																										.
Alig confidence																																																							.																			.
Template Conservation																																																							.
Template Sequence		E	A	R	V	L	V	V	D	D	E	A	N	I	V	E	L	L	S	V	S	L	K	F	Q	G	F	E	V	Y	T	A	T	N	G	A	Q	A	L	D	R	A	R	E	T	R	P	D	A	V	I	L	D	V	.	X	P	G	X	D	G	F	G	V	L	R	R	L	R	A	D	G	I	D	A	P	A	L	F	L	T
Template Known Secondary structure		S								S															T	T							S	S														S							.			S	S												T	T
Template Predicted Secondary structure																																																							.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	S	E	E	S	D	K	I	A	A	L	D	A	G	A	D	D	Y	L	S	K	P	F	G	I	G	E	L	Q	A	R	L	R	V	A	L	R	R	H	S	A	T	T	A	P	D	P	L	V	K	F	S	D	V	T	V	D	L	A	A	R	V	I	H	R	G	E	E	E	V	H	L	T	P	I	E	F	R	L
Query Conservation
Alig confidence																																																					.	.	.	.
Template Conservation																																																					.	.	.	.
Template Sequence		A	R	D	S	L	Q	D	K	I	A	G	L	T	L	G	G	D	D	Y	V	T	K	P	F	S	L	E	E	V	V	A	R	L	R	V	I	L	R	R	A	G	K	N	V	R	L	T	F	A	D	I	.	.	.	.	E	L	D	E	E	T	H	E	V	W	K	A	G	Q	P	V	S	L	S	P	T	E	F	T	L
Template Known Secondary structure			S	T	T									T	S	T	T						S	S																										T	T		.	.	.	.				T	T	T						T	T
Template Predicted Secondary structure																																																					.	.	.	.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150					.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	V	L	L	N	N	A	G	K	V	L	T	Q	R	Q	L	L	N	Q	V	W	G	P	N	A	V	E	H	S	H	Y	L	R	I	Y	M	G	H	L	R	Q	K	L	E	Q	D	P	A	R	P	R	H	F	I	T	E	T	G	I	G	Y	R	F	M
Query Conservation
Alig confidence																																																					.	.
Template Conservation																																																					.	.
Template Sequence		L	R	Y	F	V	I	N	A	G	T	V	L	S	K	P	K	I	L	D	H	V	W	R	Y	D	F	G	G	D	V	N	V	V	E	S	Y	V	S	Y	L	R	R	K	I	D	T	G	E	K	R	L	.	.	L	H	T	L	R	G	V	G	Y	V	L	R
Template Known Secondary structure								T	T	T			B										T	T	T	S			S		T																	S	S	S			.	.					T	T	T
Template Predicted Secondary structure																																																					.	.
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.			.	.	.	.	.	.	.	240	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions