|   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | I | R | V | L | S | V | D | D | S | A | L | M | R | Q | I | M | T | E | I | I | N | S | H | S | D | M | E | M | V | A | T | A | P | D | P | L | V | A | R | D | L | I | K | K | F | N | P | D | V | L | T | L | D | V | E | M | P | R | M | D | G | L | D | F | L | E | K | L | M | R | L | R | P | M | P | V | V | M | V |
Query Conservation |   |
  |
|
|
|
|
|
|
|
|   |   |   |   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |
|
|   |   |
|   |   |
|   |
|
|
|   |   |
|   |   |   |   |
|
|
|
|
|
|
|   |   |
|
|   |   |
|
|   |
|   |
|   |   |
|   |   |   |   |   |   |
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|
|
|
|
|
|
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |   | . |
|   |   |
|
|   |   |
|   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |
|
|
|
|
|
|   |   |
|
|   |   |   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |
|
|   |   |
Template Sequence |   |
P | R | R | V | L | I | A | E | D | E | A | L | I | R | M | D | L | A | E | M | L | R | E | E | . |
G | Y | E | I | V | G | E | A | G | D | G | Q | E | A | V | E | L | A | E | L | H | K | P | D | L | V | I | M | D | V | K | M | P | R | R | D | G | I | D | A | A | S | E | I | A | S | K | R | I | A | P | I | V | V | L |
Template Known Secondary structure |   |
|
|  |  |  |  |  |
| S | S |  |  |  |  |  |  |  |  |  |  |  |  |  | T | . | T |
|  |  |  |  |  |  | S | S |  |  |  |  |  |  |  |  |  |  |  |
|
| S |  |  |  |  |  | S | S |
| S | S | S |
|  |  |  |  |  |  |  |  |  |  | T | T |
| S |
|  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
| . |
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
13 | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | |
. | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . |
  |
  |   |
83 | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | S | L | T | G | K | G | S | E | V | T | L | R | A | L | E | L | G | A | I | D | F | V | T | K | P | Q | L | G | I | R | E | G | M | L | A | Y | N | E | M | I | A | E | K | V | R | T |
Query Conservation |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|
|   |
|   |
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|
|   |
Alig confidence |   |
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |
|
|   |   |   | . | . |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |
Template Sequence |   |
T | A | . |
. |
F | S | Q | R | D | L | V | E | R | A | R | D | A | G | A | M | A | Y | L | V | K | P | F | S | I | . |
. |
S | D | L | I | P | A | I | E | L | A | V | S | R | F | R | E |
Template Known Secondary structure |   |
 |  | . | . | G | G | G |  |  |  |  |  | T | T | G | G | G | S |
|  |  |  |  |  |  | S |
|
|  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
| . | . |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
92 | . | |
|
. | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | |
|
. | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . |
  |