 |
Job Description | P07330 | Confidence | 99.88% | Date | Thu Jan 5 11:00:15 GMT 2012 |
Rank | 32 | Aligned Residues | 128 |
% Identity | 23% | Template | c2rjnA_ |
PDB info |
PDB header:hydrolase | Chain: A: PDB Molecule:response regulator receiver:metal-dependent |
PDBTitle: crystal structure of an uncharacterized protein q2bku2 from2 neptuniibacter caesariensis
|
Resolution | 2.10 Å |
|
 |
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | |
. | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
| . |
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
Query Sequence |   |
M | S | K | I | R | V | L | S | V | D | D | S | A | L | M | R | Q | I | M | T | E | I | I | N | S | H | S | D | M | E | M | V | A | T | A | P | D | P | L | V | A | R | D | L | I | K | K | F | N | P | D | V | L | T | L | D | V | E | M | P | R | M | D | G | L | D | F | L | E | K | L | M | R | L | R | P | . |
M | P | V |
Query Conservation |   |
|   |   |
|
|
|
|
|
|
|
|   |   |   |   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |
|
|   |   |
|   |   |
|   |
|
|
|   |   |
|   |   |   |   |
|
|
|
|
|
|
|   |   |
|
|   |   |
|
|   |
|   |
|   |   |
|   |   |   |   |   | . |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
Template Conservation |   |
  |   |   |   |   |
|
|
|
|
|
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   | . | . |   |
|   |   |   |   |   |   |   |
|
|   |   |   |
|   |   |   |   |   |
|   |
|
|   |
|   |   |
|
|   |   |   |
|   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |
|
Template Sequence |   |
Y | K | N | Y | T | V | M | L | V | D | D | E | Q | P | I | L | N | S | L | K | R | L | I | K | R | L | G | C | . |
. |
N | I | I | T | F | T | S | P | L | D | A | L | E | A | L | K | G | T | S | V | Q | L | V | I | S | D | M | R | M | P | E | M | G | G | E | V | F | L | E | Q | V | A | K | S | Y | P | D | I | E | R |
Template Known Secondary structure |   |
| S |
|
|  |  |  |  |  |
| S |
|  |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
| . | . |  |  |  |  |  | S |
|  |  |  |  |  |  |  |  | T | T | S |
|
| S |  |  |  |  |  | S | S |
| S | S | S |
|  |  |  |  |  |  |  |  |  |  |  |
| T | T | S |  |  |
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . | . |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
5 | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | |
|
. | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . |
  |
  |   |
80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | |
. | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
| . |
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | M | V | S | S | L | T | G | K | G | S | E | V | T | L | R | A | L | E | L | G | A | . |
I | D | F | V | T | K | P | Q | L | G | I | R | E | G | M | L | A | Y | N | E | M | I | A | E | K | V | R | T | A | A | K | A | S |
Query Conservation |   |
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|
| . |   |
|   |
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|
|   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|
|   | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |
|
|   |   |   | . | . |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |
|   |   |
Template Sequence |   |
V | V | I | S | G | . |
. |
Y | A | D | A | Q | A | T | I | D | A | V | N | R | G | K | I | S | R | F | L | L | K | P | W | E | D | . |
. |
E | D | V | F | K | V | V | E | K | G | L | Q | L | A | F | L | R | E | E | N | L |
Template Known Secondary structure |   |
 |  |  |  |
| . | . | G | G | G |  |  |  |  |  |  |  |  |  | T | T |
|
| S |  |  |  |  | S | S |
|
|  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
Template Predicted Secondary structure |   |
|  |  |
|
| . | . |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
83 | . | . | . | . | |
|
. | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | |
|
. | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|