Job Description P07330 Confidence 99.67% Date Thu Jan 5 11:00:15 GMT 2012 Rank 116 Aligned Residues 119 % Identity 26% Template c2qsjB_ PDB info PDB header:transcription Chain: B: PDB Molecule:dna-binding response regulator, luxr family; PDBTitle: crystal structure of a luxr family dna-binding response2 regulator from silicibacter pomeroyi Resolution 2.10 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.		.	.
Predicted Secondary structure																																																			.																												.
Query SS confidence																																																			.																												.
Query Sequence		M	S	K	I	R	V	L	S	V	D	D	S	A	L	M	R	Q	I	M	T	E	I	I	N	S	H	S	D	M	E	M	V	A	T	A	P	D	P	L	V	A	R	D	L	I	K	K	F	N	.	P	D	V	L	T	L	D	V	E	M	P	R	M	D	G	L	D	F	L	E	K	L	M	R	L	R	P	.	M	P
Query Conservation																																																			.																												.
Alig confidence				.	.																																														.													.	.	.	.	.	.										.
Template Conservation				.	.																																																											.	.	.	.	.	.
Template Sequence		L	T	.	.	V	V	L	I	V	D	D	H	H	L	I	R	A	G	A	K	N	L	L	E	G	A	F	S	G	M	R	V	E	G	A	E	T	V	S	D	A	L	A	F	L	E	A	D	N	T	V	D	L	I	L	L	D	V	A	I	D	G	.	.	.	.	.	.	L	V	R	L	K	R	F	D	P	S	N	A
Template Known Secondary structure				.	.							S																	T	T							S	S										T	T				S											.	.	.	.	.	.									T	T	S
Template Predicted Secondary structure				.	.																																																											.	.	.	.	.	.
Template SS confidence
		1	.			.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60							.	.	.	.	.	.	.	.	.	70	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	M	V	S	S	L	T	G	K	G	S	E	V	T	L	R	A	L	E	L	G	A	I	D	F	V	T	K	P	Q	L	G	I	R	E	G	M	L	A	Y	N	E	M	I	A	E	K	V	R	T	A	A	K	A	S	L	A	A	H	K	P
Query Conservation
Alig confidence										.	.	.	.																						.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.																						.	.	.	.	.	.	.	.	.
Template Sequence		V	A	L	I	S	G	E	H	.	.	.	.	E	L	I	R	A	A	L	E	A	G	A	D	G	F	I	P	K	S	A	D	P	.	.	.	.	.	.	.	.	.	Q	V	L	I	H	A	V	S	L	I	L	E	G	E	I	F	L	P	R	S
Template Known Secondary structure										.	.	.	.									T	T		S	B				T	T	S			.	.	.	.	.	.	.	.	.												T	T			B			S
Template Predicted Secondary structure										.	.	.	.																						.	.	.	.	.	.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.					.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.										.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions