|   |
1 | . | . | |
|
|
. | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | |
|
|
|
|
|
. |
Predicted Secondary structure |   |
|
|  | . | . | . |  |  |  |  |  |  |
|
|  |  |  |  |  |  |
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
| . | . | . | . | . | . |
|
Query SS confidence |   |
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
Query Sequence |   |
M | S | E | . |
. |
. |
L | I | V | S | R | Q | Q | R | V | L | L | L | T | L | N | R | P | A | A | R | N | A | L | N | N | A | L | L | M | Q | L | V | N | E | L | E | A | A | A | T | D | T | S | I | S | V | C | V | I | T | G | N | A | R | F | F | A | A | G | A | D | L | N | E | M | A | E | . |
. |
. |
. |
. |
. |
K |
Query Conservation |   |
|   |   | . | . | . |
|   |   |
|   |   |   |   |
|   |   |
|   |
|
|
|
|   |   |   |
|
|   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |
|   |   |
|   |   |
|
|
|   |
|   |
|   |   |
|
|
|
|   |
|
|   |   |   |   |   | . | . | . | . | . | . |   |
Alig confidence |   |
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
Template Conservation |   |
  |   |   |   |
|   |
|   |   |
|   |   |   |   |
|   |   |
|
|
|
|
|
|   |   |   |
|
|   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |
|   |   |
|   |   |
|
|
|   |
|   |
|   |   |
|   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
I | R | Q | N | E | K | I | S | Y | R | I | E | G | P | F | F | I | I | H | L | I | N | P | D | N | L | N | A | L | E | G | E | D | Y | I | Y | L | G | E | L | L | E | L | A | D | R | N | R | D | V | Y | F | T | I | I | Q | S | S | G | R | F | F | S | S | G | A | D | F | K | G | I | A | K | K | Y | P | S | E | T | S |
Template Known Secondary structure |   |
|
|
| B | T | T |  |  |  |  |  |  | T | T |  |  |  |  |  |  |
|
| G | G | G | T | T |
| B |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| T | T |
|
|  |  |  |  |  |
| B | T | T | B | S | B |
|
| B |
|  |  |  |  |  |
|
|
| S | S |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
5 | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . |
  |
  |   |
72 | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | |
. | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |
|
|
| . |
|  |  |
|
|
|  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | L | A | A | T | L | N | D | T | R | P | Q | L | W | A | R | L | Q | A | F | N | K | P | L | I | A | A | V | N | G | Y | A | L | G | A | G | C | E | L | A | L | L | C | D | V | V | V | A | G | E | N | . |
A | R | F | G | L | P | E | I | T | L | G | I | M | P | G | A | G | G | T | Q | R | L | I | R | S | V | G | K |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|   |
|   |
|   |
|
|
|   |   |
|
|
|   |   |
|   |
|
|
|   |   |   | . |
|   |   |   |   |
|
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |
|   |
|
|   |
|   |
|   |
|   |
|
|
|   |   |
|   |   |   |   |
|   |   |
|
|   |   |   |   |   |   |   |   |   |
|
|   |   |   |
|
|   |
|   |   |   |   |   |   |   |
|   |   |   |   |
|   |
Template Sequence |   |
K | W | V | S | N | F | V | A | R | N | V | Y | V | T | D | A | F | I | K | H | S | K | V | L | I | C | C | L | N | G | P | A | I | G | L | S | A | A | L | V | A | L | C | D | I | V | Y | S | I | N | D | K | V | Y | L | L | Y | P | F | A | N | L | G | L | I | T | E | G | G | T | T | V | S | L | P | L | K | F | G | T |
Template Known Secondary structure |   |
 |  |  |  |  | T |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| S |  |  |  |  |  |  |
| S |
|  |  |  |  |  |  |  |  |  |  |  | S | S |  |  |  |  | S | S | T | T |
|  |  |  |
|
|  |  |  |  | T |
|
|
|
| T | T |  |  |  |  |  |  |  |  |  |
|  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |
|
|
|
|  |  |  |  |
|
|  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
92 | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . |
  |
  |   |
151 | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | |
|
|
|
|
|
. | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | L | A | S | K | M | V | L | S | G | E | S | I | T | A | Q | Q | A | Q | Q | A | G | L | V | S | D | V | F | P | S | D | L | T | L | . |
. |
. |
. |
. |
. |
E | Y | A | L | Q | L | A | S | K | M | A | R | H | S | P | L | A | L | Q | A | A | K | Q | A | L | R | Q | S | Q | E | V | A | L | Q | A | G | L | A | Q | E |
Query Conservation |   |
  |   |
|   |   |
|   |
|   |
|   |   |   |   |
|   |
|
|   |   |   |
|
|
|
|   |
|
|   |   |   |   |   |   | . | . | . | . | . | . |   |   |
|   |   |   |
|   |   |
|   |   |   |   |   |   |
|   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |
|   |
|   |
|   |   |
|   |
|   |
|
|   |   |   |
|
|
|   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
Template Sequence |   |
N | T | T | Y | E | C | L | M | F | N | K | P | F | K | Y | D | I | M | C | E | N | G | F | I | S | K | N | F | N | M | P | S | S | N | A | E | A | F | N | A | K | V | L | E | E | L | R | E | K | V | K | G | L | Y | L | P | S | C | L | G | M | K | K | L | L | K | S | N | H | I | D | A | F | N | K | A | N | S | V | E |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |  |  |  |  | T | T |
|
| S |  |  |
|
|
|
| T | T |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  | T | T | T |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
172 | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . |
  |
  |   |
225 | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | Q | L | F | T | L | L | A | A | T | E | D | R | H | E | G | I | S |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
Template Sequence |   |
V | N | E | S | L | K | Y | W | V | D | G | E | P | L | K | R | F | R |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  | T |  |  |  |  |  |  | T |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
252 | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . |
  |