Job Description P76082 Confidence 100.00% Date Thu Jan 5 12:18:25 GMT 2012 Rank 43 Aligned Residues 250 % Identity 28% Template c2d3tB_ PDB info PDB header:lyase, oxidoreductase/transferase Chain: B: PDB Molecule:fatty oxidation complex alpha subunit; PDBTitle: fatty acid beta-oxidation multienzyme complex from2 pseudomonas fragi, form v Resolution 3.40 Å

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		2	.	.	.	.	.	.		.	10	.	.	.	.	.	.	.	.	.	20	.	.	.		.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.						.	70	.	.	.	.
Predicted Secondary structure									.																.																																														.	.	.	.	.
Query SS confidence									.																.																																														.	.	.	.	.
Query Sequence		S	E	L	I	V	S	R	.	Q	Q	R	V	L	L	L	T	L	N	R	P	A	A	R	.	N	A	L	N	N	A	L	L	M	Q	L	V	N	E	L	E	A	A	A	T	D	T	S	I	S	V	C	V	I	T	G	N	A	R	F	F	A	A	G	A	D	L	N	E	M	.	.	.	.	.	A	E	K	D	L	A
Query Conservation									.																.																																														.	.	.	.	.
Alig confidence									.																.																																														.	.	.	.	.
Template Conservation
Template Sequence		K	A	I	T	V	T	A	L	E	S	G	I	V	E	L	K	F	D	L	K	G	E	S	V	N	K	F	N	R	L	T	L	N	E	L	R	Q	A	V	D	A	I	K	A	D	A	S	V	K	G	V	I	V	S	S	G	K	D	V	F	I	V	G	A	D	I	T	E	F	V	E	N	F	K	L	P	D	A	E	L
Template Known Secondary structure		S	S							G	G	G									T	T	S	S	S		B																	T	T		T	T									S	S	S	S	S	B	B											T	S	S
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	L	N	D	T	R	P	Q	L	W	A	R	L	Q	A	F	N	K	P	L	I	A	A	V	N	G	Y	A	L	G	A	G	C	E	L	A	L	L	C	D	V	V	V	A	G	E	N	A	R	F	G	L	P	E	I	T	L	G	I	M	P	G	A	G	G	T	Q	R	L	I	R	S	V	G	K	S	L	A	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	A	G	N	L	E	A	N	K	I	F	S	D	F	E	D	L	N	V	P	T	V	A	A	I	N	G	I	A	L	G	G	G	L	E	M	C	L	A	A	D	F	R	V	M	A	D	S	A	K	I	G	L	P	E	V	K	L	G	I	Y	P	G	F	G	G	T	V	R	L	P	R	L	I	G	V	D	N	A	V
Template Known Secondary structure																	S		S	S								S				T									S	S						T	T						G	G	G	G	G	T				T	T	T
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	M	V	L	S	G	E	S	I	T	A	Q	Q	A	Q	Q	A	G	L	V	S	D	V	F	P	S	D	L	T	L	E	Y	A	L	Q	L	A	S	K	M	A	R	H	S	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	W	I	A	S	G	K	E	N	R	A	E	D	A	L	K	V	S	A	V	D	A	V	V	T	A	D	K	L	G	A	A	A	L	D	L	I	K	R	A	I	S	G	E	L	D	Y	K	A	K	R	Q	P	K	L	E	K	L	K	L	N	A	I	E	Q	M	M	A	F	E	T	A	K	G	F	V	A	G	Q	A
Template Known Secondary structure										B								T	T	S	S	S					T	T	T														S	S	S	S							G	G	G	G	S			S	S																				T
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
						200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	L	A	L	Q	A	A	K	Q	A	L	R	Q	S	Q	E	V	A	L	Q	A	G	L	A	Q	E	R	Q	L	F	T	L	L	A	A	T	E	D	R	H	E	G	I	S	A	F	L	Q	K	R	T	P	D
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.
Template Conservation
Template Sequence		G	P	N	Y	P	A	P	V	E	A	I	K	T	I	Q	K	A	A	N	F	G	R	D	K	A	L	E	V	E	A	A	G	F	A	K	L	A	K	T	S	A	S	N	C	L	I	G	L	F	L	N	D	Q	E	L	K
Template Known Secondary structure			T	T														G	G	G	S																	T	T	S
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions