Job Description P46889 Confidence 89.88% Date Wed Jan 25 15:20:57 GMT 2012 Rank 95 Aligned Residues 153 % Identity 20% Template c3g5uB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:multidrug resistance protein 1a; PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding Resolution 3.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		975	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.																						.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	P	V	V	A	D	L	A	K	M	P	H	L	L	V	A	G	T	T	G	S	G	K	S	V	G	V	N	A	M	I	L	S	M	L	Y	K	A	Q	P	E	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	R	F	I	M	I	D	P	K	M	L	E	L	S	V	Y	E
Query Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.
Template Sequence		K	G	L	N	L	K	V	K	S	G	Q	T	V	A	L	V	G	N	S	G	C	G	K	S	T	T	V	Q	.	.	.	.	L	M	Q	R	L	Y	D	P	L	D	G	M	V	S	I	D	G	Q	D	I	R	T	I	N	V	R	Y	L	R	E	I	I	G	V	V	S	Q	E	P	V	L	F	A	T	T	I	A	E
Template Known Secondary structure										T	T									S	S	T	T							.	.	.	.		T	T	T	S	S			S							T	T			G	G	G	S														S	S					S	S
Template Predicted Secondary structure																														.	.	.	.
Template SS confidence
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.					.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.
		1034	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.						.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080		.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.																									.
Query SS confidence																									.	.	.	.	.																									.
Query Sequence		G	I	P	H	L	L	T	E	V	V	T	D	M	K	D	A	A	N	A	L	R	W	C	.	.	.	.	.	V	N	E	M	E	R	R	Y	K	L	M	S	A	L	G	V	R	N	L	A	G	Y	N	E	.	K	I	A	E	A	D	R	M	M	R	P	I	P	D	P	Y	W	K	P	G	D	S	M	D	A	Q	H
Query Conservation																									.	.	.	.	.																									.
Alig confidence				.	.																				.	.	.	.	.																									.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	I	.	.	R	Y	G	R	E	D	V	T	M	D	E	I	E	K	A	V	K	E	A	N	A	Y	D	F	I	M	K	L	P	H	Q	F	D	T	L	V	G	E	R	G	A	Q	L	S	G	G	Q	K	Q	R	I	A	I	A	R	A	L	V	R	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				.	.					S	S													T	T		T	T					S	T	T	G	G	G				S	S	S	S		S	S																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure				.	.																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		483	.			.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.
		1108	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	L	K	K	E	P	Y	I	V	V	L	V	D	E	F	A	D	L	M	M	T	V	G	K	K	V	E	E	L	I	A	R	L	A	Q	K	A	R	A	A	G	I	H	L	V	L	A	T	Q	R	P	S
Query Conservation
Alig confidence		.	.	.	.	.	.																															.	.	.	.	.
Template Conservation		.	.	.	.	.	.																															.	.	.	.	.
Template Sequence		.	.	.	.	.	.	P	K	I	L	L	L	D	E	A	T	S	A	L	D	T	E	S	E	A	V	V	Q	A	A	L	D	K	A	R	E	.	.	.	.	.	G	R	T	T	I	V	I	A	H	R	L	S
Template Known Secondary structure		.	.	.	.	.	.		S						B	T	T		S	S																T	T	.	.	.	.	.	S	S							S
Template Predicted Secondary structure		.	.	.	.	.	.																															.	.	.	.	.
Template SS confidence
								545	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.						.	.	.	.	.	580	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions