Job Description P46889 Confidence 94.91% Date Wed Jan 25 15:20:57 GMT 2012 Rank 36 Aligned Residues 169 % Identity 17% Template c2zmeB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:vacuolar protein-sorting-associated protein 36; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex Resolution 2.90 Å

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		1121	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.		.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.
Predicted Secondary structure																																																									.																						.	.	.
Query SS confidence																																																									.																						.	.	.
Query Sequence		D	E	F	A	D	L	M	M	T	V	G	K	K	V	E	E	L	I	A	R	L	A	Q	K	A	R	A	A	G	I	H	L	V	L	A	T	Q	R	P	S	V	D	V	I	T	G	L	I	K	A	N	I	P	T	R	.	I	A	F	T	V	S	S	K	I	D	S	R	T	I	L	D	Q	A	G	A	E	.	.	.
Query Conservation																																																									.																						.	.	.
Alig confidence												.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.																						.	.	.
Template Conservation												.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	D	L	S	K	L	M	I	K	A	.	K	E	M	V	E	L	S	K	S	I	A	N	K	I	K	D	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	G	D	I	T	E	D	E	T	I	R	F	K	S	Y	L	L	S	M	G	I	A	N	P	V	T	R	E	T	Y	G	S	G	T	Q	Y
Template Known Secondary structure												.													S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S			S												T	T					S	S		S	T	T			S
Template Predicted Secondary structure												.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.																	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
																1197	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220		.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	L	L	G	M	G	D	M	L	Y	S	G	P	N	S	T	L	P	V	R	V	H	G	A	.	F	V	R	D	Q	E	V	H	A	V	V	Q	D	W	K	A	R	G	R	P	Q	Y	V	D	G	I	T	S	D	S	E	S	E	G	G	A	G	G	F	D	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.																																				.	.	.	.	.
Template Conservation																																																																												.	.	.	.	.
Template Sequence		H	M	Q	L	A	K	Q	L	A	G	I	L	Q	V	P	L	E	E	R	G	G	I	M	S	L	T	E	V	Y	C	L	V	N	R	A	R	G	M	E	L	L	S	P	E	D	L	V	N	A	C	K	M	L	E	A	L	K	L	P	L	R	L	R	V	F	D	S	G	V	M	V	I	E	L	.	.	.	.	.	Q
Template Known Secondary structure																			T	T	T	S																S	S	S													T	T	G	G	G	T		S							T	T								.	.	.	.	.	S
Template Predicted Secondary structure																																																																												.	.	.	.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.						.
		1262	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	E	L	D	P	L	F	D	Q	A	V	Q	F	V	T	E	K	R	K	A	S	I	S	G	V	Q	R	Q	F	R	I	G	Y	N	R	A	A	R	I	I	E	Q	M	E	A	Q	G	I	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	H	K	E	E	E	M	V	A	S	A	L	E	T	V	S	E	K	G	S	L	T	S	E	E	F	A	K	L	V	G	M	S	V	L	L	A	K	E	R	L	L	L	A	E	K	M	G	H	L
Template Known Secondary structure		S																		S		B										T																	T	S
Template Predicted Secondary structure
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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