Job Description P46889 Confidence 90.67% Date Wed Jan 25 15:20:57 GMT 2012 Rank 85 Aligned Residues 167 % Identity 20% Template c2yyzA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sugar abc transporter, atp-binding protein; PDBTitle: crystal structure of sugar abc transporter, atp-binding protein Resolution 2.11 Å

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		964	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.																.	.	.	.	.	.	.	.	1020	.	.			.	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Query Sequence		L	T	V	V	L	G	K	D	I	A	G	E	P	V	V	A	D	L	A	K	M	P	H	L	L	V	A	G	T	T	G	S	G	K	S	V	G	V	N	A	M	I	L	S	M	L	Y	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	Q	P	E	D	V	R	F	I	M	I	.	.	D	P	K	M
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Alig confidence																																									.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Template Conservation																																									.	.
Template Sequence		L	K	K	Y	F	G	K	V	K	A	V	D	G	V	S	F	E	V	K	D	G	E	F	V	A	L	L	G	P	S	G	C	G	K	T	T	T	L	L	.	.	M	L	A	G	I	Y	K	P	T	S	G	E	I	Y	F	D	D	V	L	V	N	D	I	P	P	K	Y	R	E	V	G	M	V	F	Q	N	Y	A	L
Template Known Secondary structure							T	T													T	T								S	T	T	S	S							.	.				T	S	S			S							T	T				T	T	S		G	G	G	T	T						S	S
Template Predicted Secondary structure																																									.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.			.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		1027		.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080		.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.
Predicted Secondary structure			.																																																						.
Query SS confidence			.																																																						.
Query Sequence		L	.	E	L	S	V	Y	E	G	I	P	H	L	L	T	E	V	V	T	D	M	K	D	A	A	N	A	L	R	W	C	V	N	E	M	E	R	R	Y	K	L	M	S	A	L	G	V	R	N	L	A	G	Y	N	E	.	K	I	A	E	A	D	R	M	M	R	P	I	P	D	P	Y	W	K	P	G	D	S	M	D
Query Conservation			.																																																						.
Alig confidence			.																																			.	.																		.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	P	H	M	T	V	F	E	N	I	A	F	P	L	R	A	R	R	I	S	K	D	E	V	E	K	R	V	V	E	I	A	R	K	L	L	.	.	I	D	N	L	L	D	R	K	P	T	Q	L	S	G	G	Q	Q	Q	R	V	A	L	A	R	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			T	T	S								G	G	G	S	S	S		S					T	T										T	T	.	.		G	G	G	T	T	S		G	G	G	S														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																						.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.			.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		1105	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	H	P	V	L	K	K	E	P	Y	I	V	V	L	V	D	E	F	A	D	L	M	M	T	V	G	K	K	V	E	E	L	I	A	R	L	A	Q	K	A	R	A	A	G	I	H	L	V	L	A	T	Q	R	P
Query Conservation
Alig confidence		.	.	.	.	.																																					.	.	.
Template Conservation		.	.	.	.	.																																					.	.	.
Template Sequence		.	.	.	.	.	L	V	K	Q	P	K	V	L	L	F	D	E	P	L	S	N	L	D	A	N	L	R	M	I	M	R	A	E	I	K	H	L	Q	Q	E	L	.	.	.	G	I	T	S	V	Y	V	T	H	D	Q
Template Known Secondary structure		.	.	.	.	.		T	T			S						S	T	T	T	T	S																				.	.	.									S
Template Predicted Secondary structure		.	.	.	.	.																																					.	.	.
Template SS confidence
							148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.				.	.	.	.	.	.	190	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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