Job Description P46889 Confidence 94.94% Date Wed Jan 25 15:20:57 GMT 2012 Rank 35 Aligned Residues 172 % Identity 15% Template c2v6jA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:rna helicase; PDBTitle: kokobera virus helicase: mutant met47thr Resolution 2.30 Å

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		987	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	V	A	G	T	T	G	S	G	K	S	V	G	V	N	A	M	I	L	S	M	L	Y	K	A	Q	P	E	D	V	R	F	I	M	I	D	P	K	M	L	E	L	S	V	Y	E	G	I	P	H	L	L	T	E	V	V	T	D	M	K	D	A	A	N	A	L	R	W	C	V	N	E	M	E	R	R	Y	K	L
Query Conservation
Alig confidence																														.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Template Conservation																														.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Template Sequence		T	V	L	D	L	H	P	G	A	G	K	T	R	R	V	L	P	Q	L	V	R	E	A	V	K	K	R	L	.	.	.	R	T	V	I	L	A	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	R	V	V	A	S	E	T	Y	E	A	L	R	.
Template Known Secondary structure								T	T	S		T	T	T	T												T	T		.	.	.							S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S											T	T	.
Template Predicted Secondary structure																														.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.				.	.	.	.	.	.	.																													40	.	.	.	.	.	.	.	.	.	50	.	.
		1067	.	.	1070	.	.	.	.	.	.											.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.
Query Sequence		M	S	A	L	G	V	R	N	L	A	.	.	.	.	.	.	.	.	.	.	G	Y	N	E	K	I	A	E	A	D	R	M	M	R	P	I	P	D	P	Y	W	K	P	G	D	S	M	D	A	Q	H	P	V	L	K	K	E	P	Y	I	V	V	L	V	D	E	F	A	D	L	M	M	T	V	G	K	K	V	E	E
Query Conservation												.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.									.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Template Conservation		.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Template Sequence		.	.	G	E	P	I	R	Y	M	G	N	E	I	V	D	F	M	C	H	S	T	F	T	M	K	L	L	Q	G	V	R	V	P	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	N	L	Y	I	M	D	E	A	H	F	L	.	.	.	.	D	P	A	S	V	A
Template Known Secondary structure		.	.	T	S									S																T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S						T	T	T			.	.	.	.	S
Template Predicted Secondary structure		.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Template SS confidence
				53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.																									.	.	.	.	.	90	.	.	.	.	.	.					.	.	.	100	.	.
		1137	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	A	R	L	A	Q	K	A	R	A	A	G	I	H	L	V	L	A	T	Q	R	P	S	V	D	V	I	T	G	L	I	K	A	N	I	P	T	R	I	A	F	T	V	S	S	K	I	D	S	R	T	I	L	D	Q	A	G	A	E	S	L	L	G	M	G	D	M	L	Y	S	G	P	N	S	T	L	P	V	R
Query Conservation
Alig confidence																														.											.	.	.																															.	.	.	.	.	.	.	.
Template Conservation																														.											.	.	.																															.	.	.	.	.	.	.	.
Template Sequence		A	R	G	Y	I	E	T	R	V	S	M	G	D	A	G	A	I	F	M	T	A	T	P	P	G	T	T	E	.	A	F	P	P	S	N	S	P	I	I	.	.	.	D	E	E	T	R	I	P	D	K	A	W	N	S	G	Y	E	W	I	T	E	F	D	G	R	T	V	W	F	V	H	.	.	.	.	.	.	.	.
Template Known Secondary structure													T	S								S	S		T	T				.	S	S				S	S				.	.	.								S	S			S	S							S		S	S							S	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																														.											.	.	.																															.	.	.	.	.	.	.	.
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.	.				150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		1217	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	H	G	A	F	V	R	D	Q	E	V	H	A	V	V	Q	D	W	K	A	R	G
Query Conservation
Alig confidence		.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	S	I	K	Q	G	A	E	I	G	T	C	L	Q	K	A	G
Template Known Secondary structure		.	.	.	.	.	.	S														T	T
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions