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Job DescriptionP46889
Confidence95.28%DateWed Jan 25 15:20:57 GMT 2012
Rank31Aligned Residues116
% Identity22%Templatec2p6uA_
PDB info PDB header:dna binding proteinChain: A: PDB Molecule:afuhel308 helicase; PDBTitle: apo structure of the hel308 superfamily 2 helicase
Resolution3.14 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   986...990.........1000.........1010.........1020.........1030.........1040.........1050.........1060.....
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Query Sequence  HLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYK
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Template Sequence  NLLLAMPTAAGKTLLAEMAMVREAIKGG. . . . KSLYVVPLR. . . . . . . . . . . . . . . . . . . . . . . . . . . . ALAGEKYESFK
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SS............................G
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   42.......50.........60......... 70........ .80.........
 
   1066...1070... ......1080.........1090.........1100.........1110.........1120..
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Query Sequence  LMSALGVR. . . . . . . . . . . . . . . . . . . . . . . NLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDE
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Template Sequence  KWEKIGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRAS. . . . . . . . . . . . . . . . . . . . . . . WIKAVSCLVVDE
Template Known Secondary structure  GGGTTT



S

S


TTGGG
STT
S.......................SGGG

TT
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   90.........100.........110.........120.........130.... .....140......
 
   1123......1130 .........1140.........1150......
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Query Sequence  FADLMMTV. GKKVEELIARLAQKARAAGIHLVLAT
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Template Sequence  IHLLDSEKRGATLEILVTKMRRMNKALRVIGLSAT
Template Known Secondary structure  GGGGG
TTT
TT


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   147..150.........160.........170.........180.
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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