Job Description P46889 Confidence 87.86% Date Wed Jan 25 15:20:57 GMT 2012 Rank 125 Aligned Residues 187 % Identity 16% Template c2f55C_ PDB info PDB header:hydrolase/dna Chain: C: PDB Molecule:polyprotein; PDBTitle: two hepatitis c virus ns3 helicase domains complexed with2 the same strand of dna Resolution 3.30 Å

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		986	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	L	L	V	A	G	T	T	G	S	G	K	S	V	G	V	N	A	M	I	L	S	M	L	Y	K	A	Q	P	E	D	V	R	F	I	M	I	D	P	K	M	L	E	L	S	V	Y	E	G	I	P	H	L	L	T	E	V	V	T	D	M	K	D	A	A	N	A	L	R	W	C	V	N	E	M	E	R	R	Y	K
Query Conservation
Alig confidence																								.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	A	H	L	H	A	P	T	G	S	G	K	S	T	K	V	P	A	A	Y	A	A	.	.	.	.	.	.	.	Q	G	Y	K	V	L	V	L	N	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	V	A	A	T	L	G	F	G	A	Y	M	S
Template Known Secondary structure									S	S	S	S	T	T	T	T	S						T	.	.	.	.	.	.	.	T	S								S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S
Template Predicted Secondary structure																								.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220								.	.	.	.	.	.	.	.	.	230																													.	.	.	.	.	.	.	.	.	240	.	.	.
		1066	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	M	S	A	L	G	V	R	N	L	A	G	Y	N	E	K	I	A	E	A	D	R	M	M	R	P	I	P	D	P	Y	W	K	P	G	D	S	M	D	A	Q	H	P	V	L	K	K	E	P	Y	I	V	V	L	V	D	E	F	A	D	L	M	M	T	V	G	K	K	V	E	E	L	I	A	R	L	A	Q	K	A
Query Conservation
Alig confidence															.	.	.	.	.	.	.																																		.	.				.
Template Conservation															.	.	.	.	.	.	.																																		.	.				.
Template Sequence		K	A	H	G	I	D	P	N	I	R	T	G	V	.	.	.	.	.	.	.	R	T	I	T	T	G	G	S	I	T	Y	S	T	Y	G	K	F	L	A	D	G	G	C	S	G	G	A	Y	D	I	I	I	C	.	.	D	E	C	.	H	S	T	D	S	T	T	I	L	G	I	G	T	V	L	D	Q	A	E	T	A
Template Known Secondary structure				S	S								S	S	.	.	.	.	.	.	.								S												T	T	S	S	S	T	T			S					.	.	T	T	T	.	T			S											T	T	S	S	T	T	T
Template Predicted Secondary structure															.	.	.	.	.	.	.																																		.	.				.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.								.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.			290	.	.		.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		1146	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	A	G	I	H	L	V	L	A	T	Q	R	P	S	V	D	V	I	T	G	L	I	K	A	N	I	P	T	R	I	A	F	T	V	S	S	K	I	D	S	R	T	I	L	D	Q	A	G	A	E	S	L	L	G	M	G	D	M	L	Y	S	G	P	N	S	T	L	P	V	R	V	H	G	A	F	V	R	D	Q
Query Conservation
Alig confidence													.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	A	R	L	V	V	L	A	T	A	T	.	.	.	.	.	.	.	P	P	G	S	V	T	V	P	H	P	N	I	E	E	I	G	L	S	N	N	G	E	I	P	F	Y	G	K	A	I	P	I	E	A	I	K	G	G	R	H	L	I	F	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	S	K	K
Template Known Secondary structure		T									S	S	.	.	.	.	.	.	.		T	T							T	T		B						S		S	S				T	T									T	T	S	B						.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S
Template Predicted Secondary structure													.	.	.	.	.	.	.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.								.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.															.	370	.	.
		1226	.	.	.	1230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	H	A	V	V	Q	D	W	K	A	R	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	C	D	E	L	A	A	K	L	T	G	L	G
Template Known Secondary structure													T	T
Template Predicted Secondary structure
Template SS confidence
		373	.	.	.	.	.	.	380	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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