Job Description P46889 Confidence 91.91% Date Wed Jan 25 15:20:57 GMT 2012 Rank 70 Aligned Residues 84 % Identity 8% Template c1w7pD_ PDB info PDB header:protein transport Chain: D: PDB Molecule:vps36p, ylr417w; PDBTitle: the crystal structure of endosomal complex escrt-ii2 (vps22/vps25/vps36) Resolution 3.60 Å

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		1222	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.								.	.	.	.	.	.	.	.	1290	.	.	.	.
Predicted Secondary structure																																																														.	.	.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.	.	.
Query Sequence		V	R	D	Q	E	V	H	A	V	V	Q	D	W	K	A	R	G	R	P	Q	Y	V	D	G	I	T	S	D	S	E	S	E	G	G	A	G	G	F	D	G	A	E	E	L	D	P	L	F	D	Q	A	V	Q	F	V	T	E	K	R	K	.	.	.	.	.	.	.	A	S	I	S	G	V	Q	R	Q	F	R	I	G
Query Conservation																																																														.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.																																.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.
Template Sequence		I	S	P	M	E	M	R	E	A	C	E	R	F	E	H	L	G	L	N	E	L	K	L	.	.	.	.	.	.	V	K	V	N	K	R	I	L	C	V	T	S	E	K	F	D	V	V	K	E	K	L	V	D	L	I	G	D	N	P	G	S	D	L	L	R	L	T	Q	I	L	S	S	N	N	S	K	S	N	W	T
Template Known Secondary structure												T	T	G	G	G	G	T		T	T				.	.	.	.	.	.				S	S	S						S	S														T	T	S	T	T											S		S	S	S				B
Template Predicted Secondary structure																									.	.	.	.	.	.
Template SS confidence
		455	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.							.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.
		1295	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	N	R	A	A	R	I	I	E	Q	M	E	A	Q	G	I	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	G	I	L	M	E	V	L	Q	N	C	V	D	E	G	D	L
Template Known Secondary structure															T	T	S
Template Predicted Secondary structure
Template SS confidence
		529	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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