Return to main results Retrieve Phyre Job Id

Job DescriptionP46889
Confidence68.56%DateWed Jan 25 15:20:57 GMT 2012
Rank386Aligned Residues174
% Identity11%Templatec1oy8A_
PDB info PDB header:membrane proteinChain: A: PDB Molecule:acriflavine resistance protein b; PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump
Resolution3.63 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   22.......30.........40.........50........ .60.........70.........80.........90 ...
Predicted Secondary structure 












...



.....
Query SS confidence 




































. . .































. . . . .


Query Sequence  LLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHE. . . PIHNLGGMPGAWLADTLFFIFGVMAYTIPVII. . . . . VGG
Query Conservation 
 
   
     
  
  

 

 
 



  
    ...   
  
  

  

 
    
  
   
   .....   
Alig confidence 




















.......








...































.....


Template Conservation            

 


 
 

.......  
  

    
  
   
       
  

 


    
 


 






Template Sequence  VVKTLVEAIILVFLVMYLFLQ. . . . . . . NFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVV
Template Known Secondary structure 

.......
TTTTTTTTTTT

S
Template Predicted Secondary structure 
.......




Template SS confidence 















































































   340.........350.........360 .........370.........380.........390.........400.........410..
 
   94.....100. ........110.........120.........130.........140.........150.........160.........170.
Predicted Secondary structure 


..

















Query SS confidence 







. .





































































Query Sequence  CWFAWRHQ. . SSDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSSGGTIALLCVW
Query Conservation       
  ..             
  
   
      
  
          

 

              

 
 

   
Alig confidence 







..































....

































Template Conservation     
 
     
     
   
   
   

 





 

 .... 
 
        
    
     
  


 

  
Template Sequence  VENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFV. . . . PMAFFGGSTGAIYRQFSITIVSAMALSVLVALIL
Template Known Secondary structure  T


STTTTST....TTT


GGGTTT
Template Predicted Secondary structure 



....


Template SS confidence 















































































   413......420.........430.........440.........450.... .....460.........470.........480........
 
   172.......180. ........190.........200......
Predicted Secondary structure 

..




Query SS confidence 









. .
























Query Sequence  AAGLTLFTGW. . SWVTIAEKLGGWILNILTFASNRTR
Query Conservation    
  
 

 ..


 
    
   
      




Alig confidence 









..
























Template Conservation   


     
                  
        
Template Sequence  TPALCATMLKFGWFNRMFEKSTHHYTDSVGGILRSTG
Template Known Secondary structure  S


T

Template Predicted Secondary structure 










Template SS confidence 




































   489490.........500.........510.........520.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions